XLOC_004278 (CR352285.1)


Basic Information

Item Value
gene id XLOC_004278
gene name CR352285.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37297501 ~ 37298097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008173
tttttaagatatttattgttattatttatgtgactttttttttgggACTGTAAGATTTGTACATGATATATTAGTTCTTTTTATTTCTGTACAGCAGTGCAAACACTTCCAATGTGTGTGTCCGCATGCTGAATGACTCTGTGTGTACGTGTGCATCACGGAGGACAAGCGTTGACATTATGATGGTGTGTACTGTGTTTTGAGTATATGATGTGTCCTCGCCCACATCTTCCTGCCCACTGCCagtggattttatttatttatttatttattttgcccgTGCAACTAAATGAAAAGCGTTTGCATGTTTTGGGTGTGCAGATCTGAGACGCTAAGAGTGTGGGATATGCTTGCATGACTGTGTCTGTGTATGCAAACAGGATTGTTTCAGGGTGTGAAtgctgtgtgtatgagtgtgtgtgtgtgtgttgcagaaaAAGTCGACTGGGGTGTTCGGTGTGAAATCTGTGTCATGTTCGATGTTTTTAAACCCTCGAACTCCCTGATATTTGCTATTGTATGTGTTGTAACCCCCAACTATTCTTGAGTGTCAGTCGGCTTGTTTATATCATTAAATAAAAGTGACTTTCTTTCAGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0098657 import into cell biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0044297 cell body cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0150034 distal axon cellular_component
GO:0098793 presynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105463

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008173 True 597 lncRNA 0.39 1 37297501 37298097

Neighbor

gene id symbol gene type direction distance location
XLOC_004277 NINJ1 coding downstream 176547 37105640 ~ 37120954 (-)
XLOC_004276 NA coding downstream 201967 37085620 ~ 37095534 (-)
XLOC_004275 BX248521.1 coding downstream 252962 37038420 ~ 37044539 (-)
XLOC_004274 BX248521.2 coding downstream 281994 37010161 ~ 37015507 (-)
XLOC_004273 cacna1da coding downstream 333499 36793473 ~ 36964002 (-)
XLOC_004279 CR352285.2 coding upstream 1274 37299371 ~ 37299485 (-)
XLOC_004280 erc2 coding upstream 12784 37310881 ~ 37425407 (-)
XLOC_004281 bsnb coding upstream 133596 37431693 ~ 37589293 (-)
XLOC_004282 NA coding upstream 177416 37475513 ~ 37476968 (-)
XLOC_004283 NA coding upstream 294911 37593008 ~ 37603981 (-)
XLOC_004063 CR854846.1 misc downstream 21169823 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24605810 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24675734 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24706205 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24784239 12512966 ~ 12513262 (-)
XLOC_004271 CR457444.8 non-coding downstream 670179 36620717 ~ 36627322 (-)
XLOC_004270 NA non-coding downstream 728235 36568924 ~ 36569266 (-)
XLOC_004284 NA non-coding upstream 315450 37613547 ~ 37614538 (-)
XLOC_004287 NA non-coding upstream 482481 37780578 ~ 37827473 (-)
XLOC_004269 NA non-coding downstream 610340 36484392 ~ 36687161 (-)

Expression


Co-expression Network