XLOC_004277 (NINJ1)


Basic Information

Item Value
gene id XLOC_004277
gene name NINJ1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37105640 ~ 37120954 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008172
CAGTCGCTTGTCCAGCCCCTTCATAGTCCATGAGATCATAATGCACCACAAACACTTAGAAATCCAGATATTTACGGACTGTTAGGTATAATCAAAGCAAGGATTATGGCTTCAGAAGCGATGGAGTTGAATGGAGGTGTAAACCGAAGGGATGATCCAGGAGCGCGTCCTCAACAGGGCCGCATGTCAAGGAACACCCCGCTTAACATGAACCATTACGCCAACAAGAAGAGTGCAGCGGAGAGCATGCTGGATATAGCGCTGCTGATGGCCAACGCGTCCCAGCTGAAGACGGTGCTGGAGCTCGGACCCTCCTTCTCCTTCTACATCCCCCTCATCACCCTCATCAGCATCTCCCTCACCCTGCAGATCATCGTGGGTATCCTTCTCATCTTCATAGTGAAGTGGAATCTGAACGACTCAAGTAAACACTACATACTGAATCTCCTGGAGAACATCGTCACCGCTCTCGTCTTCATCGTTGTTGTAGTCAATGTTTTCATCACAGCTTTTGGCGTCCAAAGACCAGACGACAAGACATCGTAACCTGCAACACTCTGGACATTATCAATAATCAAAACATAACACACTCAAATGTGCCTCTATGTAAATATCCACATTTGGAAAACCTTATTTTCAGTCCTAGAAATGAGGCAATAACAGCTGGAATGTTATCAATTGTGTATCACACTGTAAATTATTACGAACGCAAATGTAATGGCACATAACTGTTATATCGGTAATTGTTTATGTGTAACTCACAAAGTAACAAATATTCTGTTactgcagtgcttcccacacatagactttacttgggcgggccgaCCAGGTAT

Function

symbol description
ninj1 Acts upstream of or within heart development and skeletal muscle tissue development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ1 (ninjurin 1).

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-96 Acts upstream of or within heart development and skeletal muscle tissue development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ1 (ninjurin 1).

Ensembl:

ensembl_id ENSDARG00000103663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008172 True 833 mRNA 0.45 3 37105640 37120954

Neighbor

gene id symbol gene type direction distance location
XLOC_004276 NA coding downstream 10106 37085620 ~ 37095534 (-)
XLOC_004275 BX248521.1 coding downstream 61101 37038420 ~ 37044539 (-)
XLOC_004274 BX248521.2 coding downstream 90133 37010161 ~ 37015507 (-)
XLOC_004273 cacna1da coding downstream 141638 36793473 ~ 36964002 (-)
XLOC_004272 cacna2d3 coding downstream 339806 36688794 ~ 36765834 (-)
XLOC_004278 CR352285.1 coding upstream 176547 37297501 ~ 37298097 (-)
XLOC_004279 CR352285.2 coding upstream 178417 37299371 ~ 37299485 (-)
XLOC_004280 erc2 coding upstream 189927 37310881 ~ 37425407 (-)
XLOC_004281 bsnb coding upstream 310739 37431693 ~ 37589293 (-)
XLOC_004282 NA coding upstream 354559 37475513 ~ 37476968 (-)
XLOC_004063 CR854846.1 misc downstream 20977962 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24413949 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24483873 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24514344 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24592378 12512966 ~ 12513262 (-)
XLOC_004269 NA non-coding downstream 418479 36484392 ~ 36687161 (-)
XLOC_004283 NA non-coding upstream 472054 37593008 ~ 37603981 (-)
XLOC_004284 NA non-coding upstream 492593 37613547 ~ 37614538 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_09522093_09523814 NINJ1 coding CI01000306 null 9522033 ~ 9525553 (-)