XLOC_004280 (erc2)


Basic Information

Item Value
gene id XLOC_004280
gene name erc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37310881 ~ 37425407 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008175
ATGTTGAAGGCGAATGGATTGCTGAATACGGAAGACCGAGAGGAGGAGATCAAGCAGATGGAGGTCTACAAAAACCACTCCAAGTTCATGAAGACCAAGATTGACCAGCTCAAGCAGGAGCTCTCCAAGAAAGAGTCTGAGCTTTTGGCTCTGCAAACAAAACTGGAAACTCTGAATAATCAGAATTCCGACTGCAAACAACATATTGAAGTGCTCAAAGAATCCCTCACTGCCAAAGAGCAACGCGCTGCCATCTTACAAACagagGTGGATGCTCTCAGGTTGCGCCTTGAGGAGAAAGAATCATTCCTTAATAAAAAGACAAAGCAGCTTCAAGACTTGACAGAGGAGAAGGGAACTCTGGCTGGAGAAATCCGAGACATGAAGGACATGCTGGAAGTCAAAGAACGCAAAATCAACGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGAGGGATAAAGATAAGCAGCTGGGGAACCTGAAGGACAGAGTGAAGTCTCTACAGACGGACTCCAGCAACACTGACACTGCCCTCGCCACGCTGGAGGAAGCTCTGTCTGAGAAGGAGCGAATTATCGAGCGACTGAAAGAGCAAAGAGAGCGTGAAGACCGAGAGCGAATGGAGGAGCTGGATTCATATAAAAAGGAGAATAAAGATCTGAAAGAGAAGGTGAACACACTGCAGGTGGAGCTGACGGAGAAAGAGtCGAGTCTGATAGATCTGAAGGAACATGCGTCCTCGTTGGCCTCGTCAGGCCTCAAGAAAGACTCCAAACTCAAGTCTCTCGAGATCGCCATCGAGCAGAAGAAAGAGGAGTGCAATAAACTGGAGACGCAGTTACAAAAGCAGGCAGAGCAGCTGTTCAGTCAAATGAACAACCCCAAGGCCCATGAAGTGGAGGTGCAGCAGAGCTCGCGTGGAAACCCTGAGTACGTGGATCGAGTCAAACTTCTGGAAAAAGAGGTTTCGTACTTCAAAGATGAGTCCAGCAAAGCTCAGAACGAAGTGGAGCGGTTACTGGAGATCCTGAGAGAGGTGGAGACCGAGAAAAACGACAAGGATAAGAAGATTCAGGAGTTGGAAAGTCTCGCTCCCAGGCAAACCAAGGATCAAATTAAAAAGGGCCCAGGAATCAAGCTTGGCCCTCAGATGGACAAAAAAGGCCCAGGGAACATCTTGCAAGACCAGCGCAAGGATAACCCAATGGACAACCCAAAGATGGAGGAGTTGATGAATGTTTTAGAGAAGACAAGGCAAGAACTGGATGCCACCAAACAGCGTCTGTCCTCCACCCAACAGTCTCTGTCTGAGAGAGACGGCCATCTGACCAACCTCCGACAGGAACGCAGAAAACAGCTTGAGGAGATCTTAGAGATGAAACAACAGGCTCTGCTCGCTGCTATCAGTGAGAAGGATGCAAACATCGCTTTGCTGGAGCTTTCGTCCTCCAATAAGAAGAAAACGCAGGAGGAAGTGCTGGCGCTGAAGAGAGAGAAGGACAGACTGATGCATCAGCTCAAACAGCAGACACAAAGCCGAATGAAACTGATCGCCGACAACTACGAGGACGACCATTACCACCCTCACGCTCCACCTCCCCACATGCAACCTCAACCACTTCACCCTCAACCCCAACCGCAGCCGCCATACCCACAGGGCCCGCACCCCCATCAGCCTCCATACCCACACGCACCCCATCCACAGCACCCACAGCCTCCTCCACACCACCCACAGCACCTGCAGCAGCCTCAACCACCCGGCCCACACCCTCCCCGACCCCAACAGCCTCACCCTCAGCACCAACAGCACCCTCAGCACCAACAACACCCTCAGCATCCTCAACACCCTCAACATCCTCAACACCCCCAACATCCTCATCCTGGGATCCCcccacagcagcagcagcagcatccgCACCTCCAGCACCCTCACGGACCTCCACCTCAGCAGGGCCCTCACCCTCCCCAGCCTATGCCCCACCCGCAGCAACACCCGCATCACCCTCCACACCCCGGGCCTCAGGGGCCTCACCCTCGACACCCTCCACCACATCACCGGGGGCCCGGACGCGGACAGCCTCATCCCGGACACAGACCTTCCCCAGACCAGGATGATGAAGAAGGAATTTGGGCTTAA
>TCONS_00008176
ATGTATGGCAGCGCACGTGCCGTCGGCCACATCGAGGGCAGTCCCGCTCGTTCCCCGCGGCTGCCCCGTTCTCCTCGATTGGGCCACCGTCGAGCCAACAGCAGCAGTTCGGGTGGAAAAACCTTATCCATGGAAAACATCCAGTCTCTCAATGCTGCCTACGCCACATCTGGCCCAATGTACCTAAGCGACCATGAAGGCGTTGGGTCCACGGCGACCTACCCTAAAGGCACCATGACACTCGGTCGGGCCACGAGTCGTGCCATGTATGGCGGTCGGGTCACAGCGATGGGAAGCACCCCTAATATCGCCACGGTGGGAATCCCGCATGCAGACCTTCAGTCTTATGGAGACCTGGGCTCTCTGTCTCTGCTCCACCACCAAGGGACACCATCAGCCCTGCTGCGTCAGGTGGTCCGGGGCGGCGGTGGGGAACTTCTGGAACTCCAAGCGCAGCTACGGGACATGCAGAGGGAAAATGAGCTGCTTCGGAGGGAGCTGGACCTGAAGGACAGTAAGCTGGGATCCTCCACCAACAGCATCAAGAGCTTCTGGAGCCCCGAGCTGAAGAAAGAGCGCATAATGAGGAAAGAGGAGGCGGCGCGCACTTCTATCCTCAAAGAACAGATGCGGGTGACCCATGAGGAGAATCAGCACCTGCTGGACTCCAGGAGGACGAAGCACCTCCAGCTGACCATCCAGGCTCTGCAGGACGAGCTGAGGACCCAGCGAGACCTCAACCATCTCCTCCAGCAGGAGAGCAGCTCGCGGGCCGGCGGAGGAGACCACTTTACCACCATCGAGCTGACCGAAGAAAACTTCCGCAGGCTTCAGGCTGAACACGACCGACAGGCCAAAGAGCTGTTCCTTCTAAGAAAAACCCTGGAGGAGATGGAGCTGCGCATCGAGACCCAGAAACAGACGCTGGGAGCCAGAGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGTAAAGGTCTTCCTCCAGCTTCAGGACGGGCATCAGATGAGGAGGAGCAAGAGCGAGCCCGACGAATCGCTGAAGCTGAAGCTCAGCTCGGACACCTGGAGGTCATCCTGGACCAAAAAGAGAAGGAGAACATCCATCTCAGAGAGGAGCTTCATCGGAGAAACCAGCTTCACCCAGACCCTGGAAAAACTAAAGCCCTTCAGACTATCATAGAGATGAagGACACCAAAATCGCCTCCTTGGAGCGCAACATTCGGGACCTGGAGGACGAGATTCAGATGTTGAAGGCGAATGGATTGCTGAATACGGAAGACCGAGAGGAGGAGATCAAGCAGATGGAGGTCTACAAAAACCACTCCAAGTTCATGAAGACCAAGATTGACCAGCTCAAGCAGGAGCTCTCCAAGAAAGAGTCTGAGCTTTTGGCTCTGCAAACAAAACTGGAAACTCTGAATAATCAGAATTCCGACTGCAAACAACATATTGAAGTGCTCAAAGAATCCCTCACTGCCAAAGAGCAACGCGCTGCCATCTTACAAACagagGTGGATGCTCTCAGGTTGCGCCTTGAGGAGAAAGAATCATTCCTTAATAAAAAGACAAAGCAGCTTCAAGACTTGACAGAGGAGAAGGGAACTCTGGCTGGAGAAATCCGAGACATGAAGGACATGCTGGAAGTCAAAGAACGCAAAATCAACGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGAGGGATAAAGATAAGCAGCTGGGGAACCTGAAGGACAGAGTGAAGTCTCTACAGACGGACTCCAGCAACACTGACACTGCCCTCGCCACGCTGGAGGAAGCTCTGTCTGAGAAGGAGCGAATTATCGAGCGACTGAAAGAGCAAAGAGAGCGTGAAGACCGAGAGCGAATGGAGGAGCTGGATTCATATAAAAAGGAGAATAAAGATCTGAAAGAGAAGGTGAACACACTGCAGGTGGAGCTGACGGAGAAAGAGtCGAGTCTGATAGATCTGAAGGAACATGCGTCCTCGTTGGCCTCGTCAGGCCTCAAGAAAGACTCCAAACTCAAGTCTCTCGAGATCGCCATCGAGCAGAAGAAAGAGGAGTGCAATAAACTGGAGACGCAGTTACAAAAGCAGGCAGAGCAGCTGTTCAGTCAAATGAACAACCCCAAGGCCCATGAAGTGGAGGTGCAGCAGAGCTCGCGTGGAAACCCTGAGTACGTGGATCGAGTCAAACTTCTGGAAAAAGAGGTTTCGTACTTCAAAGATGAGTCCAGCAAAGCTCAGAACGAAGTGGAGCGGTTACTGGAGATCCTGAGAGAGGTGGAGACCGAGAAAAACGACAAGGATAAGAAGATTCAGGAGTTGGAAAGAGTAACATTATGGCAAACCAAGGATCAAATTAAAAAGGGCCCAGGAATCAAGCTTGGCCCTCAGATGGACAAAAAAGGCCCAGGGAACATCTTGCAAGACCAGCGCAAGGATAACCCAATGGACAACCCAAAGATGGAGGAGTTGATGAATGTTTTAGAGAAGACAAGGCAAGAACTGGATGCCACCAAACAGCGTCTGTCCTCCACCCAACAGTCTCTGTCTGAGAGAGACGGCCATCTGACCAACCTCCGACAGGAACGCAGAAAACAGCTTGAGGAGATCTTAGAGATGAAACAACAGGCTCTGCTCGCTGCTATCAGTGAGAAGGATGCAAACATCGCTTTGCTGGAGCTTTCGTCCTCCAATAAGAAGAAAACGCAGGAGGAAGTGCTGGCGCTGAAGAGAGAGAAGGACAGACTGATGCATCAGCTCAAACAGCAGACACAAAGCCGAATGAAACTGATCGCCGACAACTACGAGGACGACCATTACCACCCTCACGCTCCACCTCCCCACATACATCACCGGGGGCCCGGACGCGGACAGCCTCATCCCGGACACAGACCTTCCCCAGACCAGGATGATGAAGAAGGAATTTGGGCTTAA
>TCONS_00008177
GCGGGATGCTGATACTGGAGTGAATGCAGGACGTGGGACTCTGATGCTGATGCTGGGGGACCCGCACAGTGATGGAGCGGCGACGACGCTGAAAAGGATGCACTAAACCCCCTTGTCAATCAGCGAAGGGACTTTTCTCAAGAACACCAGACTCCCCTTGTTTCATAACTTTGGGAGATGTATGGCAGCGCACGTGCCGTCGGCCACATCGAGGGCAGTCCCGCTCGTTCCCCGCGGCTGCCCCGTTCTCCTCGATTGGGCCACCGTCGAGCCAACAGCAGCAGTTCGGGTGGAAAAACCTTATCCATGGAAAACATCCAGTCTCTCAATGCTGCCTACGCCACATCTGGCCCAATGTACCTAAGCGACCATGAAGGCGTTGGGTCCACGGCGACCTACCCTAAAGGCACCATGACACTCGGTCGGGCCACGAGTCGTGCCATGTATGGCGGTCGGGTCACAGCGATGGGAAGCACCCCTAATATCGCCACGGTGGGAATCCCGCATGCAGACCTTCAGTCTTATGGAGACCTGGGCTCTCTGTCTCTGCTCCACCACCAAGGGACACCATCAGCCCTGCTGCGTCAGGTGGTCCGGGGCGGCGGTGGGGAACTTCTGGAACTCCAAGCGCAGCTACGGGACATGCAGAGGGAAAATGAGCTGCTTCGGAGGGAGCTGGACCTGAAGGACAGTAAGCTGGGATCCTCCACCAACAGCATCAAGAGCTTCTGGAGCCCCGAGCTGAAGAAAGAGCGCATAATGAGGAAAGAGGAGGCGGCGCGCACTTCTATCCTCAAAGAACAGATGCGGGTGACCCATGAGGAGAATCAGCACCTCCAGCTGACCATCCAGGCTCTGCAGGACGAGCTGAGGACCCAGCGAGACCTCAACCATCTCCTCCAGCAGGAGAGCAGCTCGCGGGCCGGCGGAGGAGACCACTTTACCACCATCGAGCTGACCGAAGAAAACTTCCGCAGGCTTCAGGCTGAACACGACCGACAGGCCAAAGAGCTGTTCCTTCTAAGAAAAACCCTGGAGGAGATGGAGCTGCGCATCGAGACCCAGAAACAGACGCTGGGAGCCAGAGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGTAAAGGTCTTCCTCCAGCTTCAGGACGGGCATCAGATGAGGAGGAGCAAGAGCGAGCCCGACGAATCGCTGAAGCTGAAGCTCAGCTCGGACACCTGGAGGTCATCCTGGACCAAAAAGAGAAGGAGAACATCCATCTCAGAGAGGAGCTTCATCGGAGAAACCAGCTTCACCCAGACCCTGGAAAAACTAAAGCCCTTCAGACTATCATAGAGATGAagGACACCAAAATCGCCTCCTTGGAGCGCAACATTCGGGACCTGGAGGACGAGATTCAGATGTTGAAGGCGAATGGATTGCTGAATACGGAAGACCGAGAGGAGGAGATCAAGCAGATGGAGGTCTACAAAAACCACTCCAAGTTCATGAAGACCAAGATTGACCAGCTCAAGCAGGAGCTCTCCAAGAAAGAGTCTGAGCTTTTGGCTCTGCAAACAAAACTGGAAACTCTGAATAATCAGAATTCCGACTGCAAACAACATATTGAAGTGCTCAAAGAATCCCTCACTGCCAAAGAGCAACGCGCTGCCATCTTACAAACagagGTGGATGCTCTCAGGTTGCGCCTTGAGGAGAAAGAATCATTCCTTAATAAAAAGACAAAGCAGCTTCAAGACTTGACAGAGGAGAAGGGAACTCTGGCTGGAGAAATCCGAGACATGAAGGACATGCTGGAAGTCAAAGAACGCAAAATCAACGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGAGGGATAAAGATAAGCAGCTGGGGAACCTGAAGGACAGAGTGAAGTCTCTACAGACGGACTCCAGCAACACTGACACTGCCCTCGCCACGCTGGAGGAAGCTCTGTCTGAGAAGGAGCGAATTATCGAGCGACTGAAAGAGCAAAGAGAGCGTGAAGACCGAGAGCGAATGGAGGAGCTGGATTCATATAAAAAGGAGAATAAAGATCTGAAAGAGAAGGTGAACACACTGCAGGTGGAGCTGACGGAGAAAGAGtCGAGTCTGATAGATCTGAAGGAACATGCGTCCTCGTTGGCCTCGTCAGGCCTCAAGAAAGACTCCAAACTCAAGTCTCTCGAGATCGCCATCGAGCAGAAGAAAGAGGAGTGCAATAAACTGGAGACGCAGTTACAAAAGAAGGCCCATGAAGTGGAGGTGCAGCAGAGCTCGCGTGGAAACCCTGAGTACGTGGATCGAGTCAAACTTCTGGAAAAAGAGGTTTCGTACTTCAAAGATGAGTCCAGCAAAGCTCAGAACGAAGTGGAGCGGTTACTGGAGATCCTGAGAGAGGTGGAGACCGAGAAAAACGACAAGGATAAGAAGATTCAGGAGTTGGAAAGCTCAATGATTGTCTCTCCCTTTATATCACAGATGGAGGAGTTGATGAATGTTTTAGAGAAGACAAGGCAAGAACTGGATGCCACCAAACAGCGTCTGTCCTCCACCCAACAGTCTCTGTCTGAGAGAGACGGCCATCTGACCAACCTCCGACAGGAACGCAGAAAACAGCTTGAGGAGATCTTAGAGATGAAACAACAGGCTCTGCTCGCTGCTATCAGTGAGAAGGATGCAAACATCGCTTTGCTGGAGCTTTCGTCCTCCAATAAGAAGAAAACGCAGGAGGAAGTGCTGGCGCTGAAGAGAGAGAAGGACAGACTGATGCATCAGCTCAAACAGCAGGTCAACACAAAGCCGAATGAAACTGATCGCCGACAACTACGAGGACGACCATTACCACCCTCACGCTCCACCTCCCCACATGCAACCTCAACCACTTCACCCTCAACCCCAACCGCAGCCGCCATACCCACA

Function

symbol description
erc2 Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in maintenance of presynaptic active zone structure; neuromuscular synaptic transmission; and regulation of synaptic plasticity. Predicted to be located in cytoplasm and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone. Orthologous to human ERC2 (ELKS/RAB6-interacting/CAST family member 2).

GO:

id name namespace
GO:0048786 presynaptic active zone cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-700 Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in maintenance of presynaptic active zone structure; neuromuscular synaptic transmission; and regulation of synaptic plasticity. Predicted to be located in cytoplasm and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone. Orthologous to human ERC2 (ELKS/RAB6-interacting/CAST family member 2).

Ensembl:

ensembl_id ENSDARG00000105178

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008175 False 2145 mRNA 0.53 14 37310881 37359416
TCONS_00008176 False 2952 mRNA 0.53 20 37310881 37411492
TCONS_00008177 True 2931 mRNA 0.53 14 37313508 37425407

Neighbor

gene id symbol gene type direction distance location
XLOC_004279 CR352285.2 coding downstream 11396 37299371 ~ 37299485 (-)
XLOC_004278 CR352285.1 coding downstream 12784 37297501 ~ 37298097 (-)
XLOC_004277 NINJ1 coding downstream 189927 37105640 ~ 37120954 (-)
XLOC_004276 NA coding downstream 215347 37085620 ~ 37095534 (-)
XLOC_004275 BX248521.1 coding downstream 266342 37038420 ~ 37044539 (-)
XLOC_004281 bsnb coding upstream 6286 37431693 ~ 37589293 (-)
XLOC_004282 NA coding upstream 50106 37475513 ~ 37476968 (-)
XLOC_004283 NA coding upstream 167601 37593008 ~ 37603981 (-)
XLOC_004284 NA coding upstream 188140 37613547 ~ 37614538 (-)
XLOC_004285 zgc:158258 coding upstream 257871 37683278 ~ 37693019 (-)
XLOC_004063 CR854846.1 misc downstream 21183203 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24619190 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24689114 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24719585 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24797619 12512966 ~ 12513262 (-)
XLOC_004274 BX248521.2 non-coding downstream 295374 37010161 ~ 37015507 (-)
XLOC_004287 NA non-coding upstream 355171 37780578 ~ 37827473 (-)
XLOC_004290 NA non-coding upstream 559544 37984951 ~ 37987558 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G441790 NA non-coding NC_048569.1 CM023223.2 77169450 ~ 77169810 (-)