RNA id: TCONS_00008176


Basic Information

Item Value
RNA id TCONS_00008176
length 2952
RNA type mRNA
GC content 0.53
exon number 20
gene id XLOC_004280
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37310881 ~ 37425407 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTATGGCAGCGCACGTGCCGTCGGCCACATCGAGGGCAGTCCCGCTCGTTCCCCGCGGCTGCCCCGTTCTCCTCGATTGGGCCACCGTCGAGCCAACAGCAGCAGTTCGGGTGGAAAAACCTTATCCATGGAAAACATCCAGTCTCTCAATGCTGCCTACGCCACATCTGGCCCAATGTACCTAAGCGACCATGAAGGCGTTGGGTCCACGGCGACCTACCCTAAAGGCACCATGACACTCGGTCGGGCCACGAGTCGTGCCATGTATGGCGGTCGGGTCACAGCGATGGGAAGCACCCCTAATATCGCCACGGTGGGAATCCCGCATGCAGACCTTCAGTCTTATGGAGACCTGGGCTCTCTGTCTCTGCTCCACCACCAAGGGACACCATCAGCCCTGCTGCGTCAGGTGGTCCGGGGCGGCGGTGGGGAACTTCTGGAACTCCAAGCGCAGCTACGGGACATGCAGAGGGAAAATGAGCTGCTTCGGAGGGAGCTGGACCTGAAGGACAGTAAGCTGGGATCCTCCACCAACAGCATCAAGAGCTTCTGGAGCCCCGAGCTGAAGAAAGAGCGCATAATGAGGAAAGAGGAGGCGGCGCGCACTTCTATCCTCAAAGAACAGATGCGGGTGACCCATGAGGAGAATCAGCACCTGCTGGACTCCAGGAGGACGAAGCACCTCCAGCTGACCATCCAGGCTCTGCAGGACGAGCTGAGGACCCAGCGAGACCTCAACCATCTCCTCCAGCAGGAGAGCAGCTCGCGGGCCGGCGGAGGAGACCACTTTACCACCATCGAGCTGACCGAAGAAAACTTCCGCAGGCTTCAGGCTGAACACGACCGACAGGCCAAAGAGCTGTTCCTTCTAAGAAAAACCCTGGAGGAGATGGAGCTGCGCATCGAGACCCAGAAACAGACGCTGGGAGCCAGAGACGAGTCCATCAAGAAGCTGCTGGAGATGCTGCAGAGTAAAGGTCTTCCTCCAGCTTCAGGACGGGCATCAGATGAGGAGGAGCAAGAGCGAGCCCGACGAATCGCTGAAGCTGAAGCTCAGCTCGGACACCTGGAGGTCATCCTGGACCAAAAAGAGAAGGAGAACATCCATCTCAGAGAGGAGCTTCATCGGAGAAACCAGCTTCACCCAGACCCTGGAAAAACTAAAGCCCTTCAGACTATCATAGAGATGAagGACACCAAAATCGCCTCCTTGGAGCGCAACATTCGGGACCTGGAGGACGAGATTCAGATGTTGAAGGCGAATGGATTGCTGAATACGGAAGACCGAGAGGAGGAGATCAAGCAGATGGAGGTCTACAAAAACCACTCCAAGTTCATGAAGACCAAGATTGACCAGCTCAAGCAGGAGCTCTCCAAGAAAGAGTCTGAGCTTTTGGCTCTGCAAACAAAACTGGAAACTCTGAATAATCAGAATTCCGACTGCAAACAACATATTGAAGTGCTCAAAGAATCCCTCACTGCCAAAGAGCAACGCGCTGCCATCTTACAAACagagGTGGATGCTCTCAGGTTGCGCCTTGAGGAGAAAGAATCATTCCTTAATAAAAAGACAAAGCAGCTTCAAGACTTGACAGAGGAGAAGGGAACTCTGGCTGGAGAAATCCGAGACATGAAGGACATGCTGGAAGTCAAAGAACGCAAAATCAACGTCCTGCAGAAGAAGATTGAAAACCTTCAGGAGCAGCTGAGGGATAAAGATAAGCAGCTGGGGAACCTGAAGGACAGAGTGAAGTCTCTACAGACGGACTCCAGCAACACTGACACTGCCCTCGCCACGCTGGAGGAAGCTCTGTCTGAGAAGGAGCGAATTATCGAGCGACTGAAAGAGCAAAGAGAGCGTGAAGACCGAGAGCGAATGGAGGAGCTGGATTCATATAAAAAGGAGAATAAAGATCTGAAAGAGAAGGTGAACACACTGCAGGTGGAGCTGACGGAGAAAGAGtCGAGTCTGATAGATCTGAAGGAACATGCGTCCTCGTTGGCCTCGTCAGGCCTCAAGAAAGACTCCAAACTCAAGTCTCTCGAGATCGCCATCGAGCAGAAGAAAGAGGAGTGCAATAAACTGGAGACGCAGTTACAAAAGCAGGCAGAGCAGCTGTTCAGTCAAATGAACAACCCCAAGGCCCATGAAGTGGAGGTGCAGCAGAGCTCGCGTGGAAACCCTGAGTACGTGGATCGAGTCAAACTTCTGGAAAAAGAGGTTTCGTACTTCAAAGATGAGTCCAGCAAAGCTCAGAACGAAGTGGAGCGGTTACTGGAGATCCTGAGAGAGGTGGAGACCGAGAAAAACGACAAGGATAAGAAGATTCAGGAGTTGGAAAGAGTAACATTATGGCAAACCAAGGATCAAATTAAAAAGGGCCCAGGAATCAAGCTTGGCCCTCAGATGGACAAAAAAGGCCCAGGGAACATCTTGCAAGACCAGCGCAAGGATAACCCAATGGACAACCCAAAGATGGAGGAGTTGATGAATGTTTTAGAGAAGACAAGGCAAGAACTGGATGCCACCAAACAGCGTCTGTCCTCCACCCAACAGTCTCTGTCTGAGAGAGACGGCCATCTGACCAACCTCCGACAGGAACGCAGAAAACAGCTTGAGGAGATCTTAGAGATGAAACAACAGGCTCTGCTCGCTGCTATCAGTGAGAAGGATGCAAACATCGCTTTGCTGGAGCTTTCGTCCTCCAATAAGAAGAAAACGCAGGAGGAAGTGCTGGCGCTGAAGAGAGAGAAGGACAGACTGATGCATCAGCTCAAACAGCAGACACAAAGCCGAATGAAACTGATCGCCGACAACTACGAGGACGACCATTACCACCCTCACGCTCCACCTCCCCACATACATCACCGGGGGCCCGGACGCGGACAGCCTCATCCCGGACACAGACCTTCCCCAGACCAGGATGATGAAGAAGGAATTTGGGCTTAA

Function

GO:

id name namespace
GO:0048786 presynaptic active zone cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-130530-700 Predicted to be a structural constituent of presynaptic active zone. Predicted to be involved in maintenance of presynaptic active zone structure; neuromuscular synaptic transmission; and regulation of synaptic plasticity. Predicted to be located in cytoplasm and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone. Orthologous to human ERC2 (ELKS/RAB6-interacting/CAST family member 2).

Ensembl:

ensembl_id ENSDART00000166468

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008173 lncRNA downstream 12784 37297501 ~ 37298097 (-) True XLOC_004278
TCONS_00008846 lncRNA downstream 215347 37085620 ~ 37095534 (-) True XLOC_004276
TCONS_00008171 lncRNA downstream 266342 37038420 ~ 37044539 (-) False XLOC_004275
TCONS_00008845 lncRNA downstream 266961 37040376 ~ 37043920 (-) True XLOC_004275
TCONS_00008844 lncRNA downstream 296154 37013073 ~ 37014727 (-) True XLOC_004274
TCONS_00008847 lncRNA upstream 64021 37475513 ~ 37476968 (-) True XLOC_004282
TCONS_00008487 lncRNA upstream 181516 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008848 lncRNA upstream 189512 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008849 lncRNA upstream 189512 37601004 ~ 37603961 (-) False XLOC_004283
TCONS_00008181 lncRNA upstream 189512 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008172 mRNA downstream 189927 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008167 mRNA downstream 346893 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008166 mRNA downstream 353754 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008164 mRNA downstream 545047 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008178 mRNA upstream 20201 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008179 mRNA upstream 28195 37439687 ~ 37548711 (-) False XLOC_004281
TCONS_00008180 mRNA upstream 97610 37509102 ~ 37589293 (-) True XLOC_004281
TCONS_00008182 mRNA upstream 271786 37683278 ~ 37693019 (-) False XLOC_004285
TCONS_00008183 mRNA upstream 274101 37685593 ~ 37691449 (-) False XLOC_004285
TCONS_00008174 other downstream 11396 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2085742 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2844368 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2955219 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3344609 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 763579 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1536495 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1678383 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2771189 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 3266721 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU500012 True 1675 TUCP 0.53 5 CI01000306 9712849 ~ 9737144 (+)