Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008167 |
| length | 6504 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 48 |
| gene id | XLOC_004273 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 36793473 ~ 36964002 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0050885 | neuromuscular process controlling balance | biological_process |
| GO:0070509 | calcium ion import | biological_process |
| GO:0050910 | detection of mechanical stimulus involved in sensory perception of sound | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0050974 | detection of mechanical stimulus involved in sensory perception | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0050808 | synapse organization | biological_process |
| GO:0009925 | basal plasma membrane | cellular_component |
| GO:0005891 | voltage-gated calcium channel complex | cellular_component |
| GO:0097470 | ribbon synapse | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005245 | voltage-gated calcium channel activity | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| GO:0008331 | high voltage-gated calcium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-135 | Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of sound; neuromuscular process controlling balance; and synapse organization. Located in basal plasma membrane and ribbon synapse. Is expressed in central nervous system; heart; and neuromast. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CACNA1D (calcium voltage-gated channel subunit alpha1 D). |
| ensembl_id | ENSDART00000168288 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008161 | lncRNA | downstream | 106389 | 36484392 ~ 36687161 (-) | False | XLOC_004269 |
| TCONS_00008841 | lncRNA | downstream | 106394 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008840 | lncRNA | downstream | 106394 | 36484392 ~ 36687156 (-) | False | XLOC_004269 |
| TCONS_00008843 | lncRNA | downstream | 106395 | 36582452 ~ 36687155 (-) | True | XLOC_004269 |
| TCONS_00008485 | lncRNA | downstream | 166228 | 36620992 ~ 36627322 (-) | True | XLOC_004271 |
| TCONS_00008168 | lncRNA | upstream | 46173 | 37010161 ~ 37014671 (-) | False | XLOC_004274 |
| TCONS_00008169 | lncRNA | upstream | 46173 | 37010161 ~ 37014748 (-) | False | XLOC_004274 |
| TCONS_00008170 | lncRNA | upstream | 47448 | 37011436 ~ 37015507 (-) | False | XLOC_004274 |
| TCONS_00008844 | lncRNA | upstream | 49085 | 37013073 ~ 37014727 (-) | True | XLOC_004274 |
| TCONS_00008171 | lncRNA | upstream | 74432 | 37038420 ~ 37044539 (-) | False | XLOC_004275 |
| TCONS_00008164 | mRNA | downstream | 27716 | 36688794 ~ 36765834 (-) | False | XLOC_004272 |
| TCONS_00008165 | mRNA | downstream | 28174 | 36691801 ~ 36765376 (-) | True | XLOC_004272 |
| TCONS_00008159 | mRNA | downstream | 318426 | 36452294 ~ 36475124 (-) | False | XLOC_004268 |
| TCONS_00008158 | mRNA | downstream | 319112 | 36449698 ~ 36474438 (-) | False | XLOC_004268 |
| TCONS_00008160 | mRNA | downstream | 319244 | 36452516 ~ 36474306 (-) | True | XLOC_004268 |
| TCONS_00008172 | mRNA | upstream | 141652 | 37105640 ~ 37120954 (-) | True | XLOC_004277 |
| TCONS_00008175 | mRNA | upstream | 346893 | 37310881 ~ 37359416 (-) | False | XLOC_004280 |
| TCONS_00008176 | mRNA | upstream | 346893 | 37310881 ~ 37411492 (-) | False | XLOC_004280 |
| TCONS_00008177 | mRNA | upstream | 349520 | 37313508 ~ 37425407 (-) | True | XLOC_004280 |
| TCONS_00008178 | mRNA | upstream | 467705 | 37431693 ~ 37509001 (-) | False | XLOC_004281 |
| TCONS_00008119 | other | downstream | 1568411 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008105 | other | downstream | 2327037 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008102 | other | downstream | 2437888 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008088 | other | downstream | 2827278 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008078 | other | downstream | 3422183 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |
| TCONS_00008174 | other | upstream | 335383 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008194 | other | upstream | 1211083 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
| TCONS_00008207 | other | upstream | 1983999 | 38947987 ~ 38949751 (-) | True | XLOC_004305 |
| TCONS_00008210 | other | upstream | 2125887 | 39089875 ~ 39089991 (-) | True | XLOC_004308 |
| TCONS_00008222 | other | upstream | 3218693 | 40182681 ~ 40182796 (-) | True | XLOC_004319 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000306_09381571_09461159.mRNA | True | 6348 | mRNA | 0.46 | 47 | CI01000306 | 9381187 ~ 9461573 (-) |
