XLOC_004272 (cacna2d3)


Basic Information

Item Value
gene id XLOC_004272
gene name cacna2d3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36688794 ~ 36765834 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008164
ACGCGCTAGGTCTCCTTTCCCAGATTTTACTCAAGAGCCTCACAATCTCGAGGACTTTTCAGCTCGCTTCTCCTCACTAAAACTTCAGCACATCCCACTGACCCGAAAGTGTCGCTCATCGTAATATCAGCAGCAGCCAGACAGTAGCACCGAGTTAATTTGCTCCCAATCAGCAccattacatttcttttttttttttgttctctgtAGCCTCGATGCACGAATAAAAAAGCAAAAGGATCGATGTCAAAGAGCGCGAGCAGGAGGTCGAGGAGTGTGTGACAGCTGGGCGGAGAGACTGAAACTCCGGAGGCTCCTGCACTCGCGCTGGGGCGGGCACGTGCGCGGCTGAACAGGCGCTCGGTGCTGTTTTTTGTAACCGAGGGGAGAGACCCGAGAGGAGGGGGGACTTCTAAAGCCGCCGGTTCCGTTGCAGCGTAAGAAATTTTGGGGGAAGGATGCAGCGGAACCGGAGAAATCCTGCTCTGCTCTGGTGTGTGATGCTGAGCGCGTGCTGGACGCCGCTGGAGGTGCGGGGGTCCCAACCGGAGATTCCCCTATCAGTGGTGAAACTCTGGGCTTCAGCGTTTGGTGGTGAAATAAAATCAATAGCTTCAAAATACTCAGGATCTCAGCTCTTACAGAAGAAATACAAGGAGTATGAGAAGTCGGTGCGAATTGAGGAGATCGACGGCGCAAAATTGGTGAAAAATCTGGCGCAGAACATGGAGGAGATGTTTCGGAAAAAAGCGGAGGCCACACGAAGGCTCGTCGAAGCGGCAGAAGAAGCTCATCTTCAGCATGAAGAAAACCCAGACCTACAGTATGAGTATTTCAACGCAGTGCTGATAAACGAGGTGGATGAGGATGGGAATAGCGTGGAGCTGGGAGGAGAGTTTCTCCTGGAACCCAACGATCATTTTAATAACCTATCCGTCAACCTCAGCCTCAGCGTGGTGCAGGTGCCAACCAACATGTACAATAAAGATCCTGACATAGTCAATGGAGTTTACTGGTCGGAAGCCTTGAACAAAGTTTTCGTGGATAACTTCAGGAGAGACCCAACCCTCATCTGGCAGTACTTTGGAAGCGCTAAAGGTTTTTTCCGACAATACCCAGGCGTGAAATGGTATCCTGACGAACACGGCGTCATTGCATTTGATTGCAGAAACAGAAAATGGTATATCCAAGCAGCCACTTCACCTAAAGATGTTGTGATTCTAGTGGACGTCAGTGGCAGTATGAAGGGTTTAAGACTGACTATAGCCAGACAGACGGTTGCTTCAATACTGGACACACTCGGCGATGATGACTTCTTCAACATTATTGCATACAACCAAGAGATCCATTACGTGGAGCCCTGTCTAAACGGCACTCTGGTTCAAGCTGACAGTACTAATAAGGATCACTTTAAAGAGCATCTGGACAAGTTGTTCGCCAAAGGAATCGGACTCCTGGGCAATGCACTGAGCGAGGCTTTCACTATCTTAAATGAGATTAATCAGACGGGCCGTGGAAGTTCATGTAGTCAGGCGATCATGCTGATAACAGATGGAGCCACTGAAATGTACGATGATGTTTTCGCCAAATATAACTGGCCTGAACGTAAGGTCCGTATATTCCCATACCTGATTGGCCGTgaatctgcatttgctgataACCTAAAATGGATGGCGTGTGCCAATAAAGGTTACTTTAGTCAGATCTCCACACTGGCTGACGTTCAGGAGAATGTGATGCGGTATTTACATGTGATGAGCAGACCTAAAGTTATCGACCACGAACATGACACAGTGTGGACTGAGGCCTACGTCGACAGCGCACTCGCACAGGCGCACAAGCTTGGAGAGAATAAAGGTCCAAACCCGATGACCACAGTGGCCATGCCTGTGTTTAGCACCAAGAATGAAACGAAAAACCAAGGCATCCTGCTGGGCGTCGCGGGCACTGATATCCCCATTCAGGAGCTAATGAAAGTCATCCCAAAACACAAGCTAGGAATACACGGATATGCTTTTGCCATCACCAGTAATGGATATCTCCTGTTGCACCCTGACCTGAGGCCCCTGTACCAGGAGGGCCAGAAGAGGAAGAAACCCAGTTACAGCAGTGTGGACCTGTCCGAGGTGGAGTGGGAGGACACAGAGGATGTTtTGCGTACAGCGATGGTGAACAGGAAAACTGGCACTTTCTCAATGGAAGTAAAAAGAACAGTGGACAAAGGGAAACGAGTCTTGACGATGCACAATGATTATTACTACACAGATATTAAAGGAACTCCATTTAGTGTAGGAGTGGCACTCTCTCGAGGACATGGAAAATACTTCTTTAAAGGGAATGTTTCACTAGAAGCTGgtcTACATGATCTGGAGCAGCCGGATGTAGCCCTTGCTGATGAATGGACGTACTGTACCACAGAAGAGCATCATGAGCATCGACACCTGACTCAAGTTCAGGCCATCAAAATCTACATGACCAGCCGGAAACCACATTTCAAGTGTGACAGAGAGCTGATTCAGCAGGTTCTGTTTGATGCTGTGGTCACCGCTCCTGTAGAAGCCTACTGGACTGGACTGGCCCTCAATAAATCTGAGAACTCAGATAAAGGGGTTGAGATTGCTTTTCTCGGCACCCGGACTGGCCTTTCACGTACCAACTTGTTTGTAGTTCCTGAGCAACTGACCAATCGAGATTTCCTCACTGCTGAAGATAAGGAGGGCGTCTTTAACGCTGATCACTTTCCTCTGTGGTATAAAAGAGCAGCAGAGCAGGTGCCCGGCACATTTGTGTACTCCATTCCCTTCAGTTCAGGTGGTGAAAATAAGAGTGTGGTTTTGGCAAGCACTGCTATCCAGCTTCTCGATGACAGAAAGTCTCCTATTGTGGCAGCTGTGGGAATTCAAATGAAGCTGGAATTCTTTCAGAGAAAATTCTGGACCGCTAGTCGGCAGTGTAATGCTCTGGATGGGAAATGCACCATCAGTTGTGATAATGAGGACATTAAATGCTATCTCATAGACAACAATGGCTTCATCCTGGTCTCTGAAGACACTTCTCAGACaaacctcttctttggaaaagtGGAAGGAGCCGTCATGAATAAACTGCTTCTGATGGGCTCGTTTAAAAAGATTAATTTGTATGACTATCAGGCTCTGTGTAAGGAGTACGCAGGCAGCAGTGACAGCGCACGCACTTTACTGGATCCCTTCACCACTGTGAAATGGCTCTTGACAGAACTTGTCATATTTCTGCTGGAGTTTAACCTGTATAGCTGGTGGAACTGTGACTCCACAGTCAAAGCTCAGAGATCTCAGAGGACAATGATGGTGCCCTGTGACACAGAATACCCAGCCTTCGTCTCAGAGCGTACCATCAAAGAGACAACTGGCAACATTGACTGCAATGGCTGTATACGGACATTTGTGATTCAGCAGATTCCCAGCAGTAACCTGTTTATGGTGGTGGTTGAGAATAAATGTGACTGTGGCTCTGCTCTTCCAGTTACCATGGAGCCCATTGAGATCATTTATAATGAGTCACTGAAGTGTGACAGATTGAAGTTTCAGAAGGATCGCAGACGACCACAGTCCTGCCATCCATTTCATCCAGAGGAGAATGCTGTGGAATGTGGATCAGCGAATGCTTTGAGTTTCCCACTGGTGGCCATTTTAATCCCAGCATTGTCATTAATGATCAGCAGGTGACCTCTGACCCCTGCTGCTTTGACCCATTAGTCTTACTAAACTCAAATCAGAGAGCCTTGCTTCCGCTAAACATGAAGTGTCACTCCACAGAGGCCAAATCATCTTTGTGATGTCTGAAGATTACTGAAGAAGATAGATGATATTTATTGCCGTCACGGACCGTGTTAGAATGTGCTGAGTGTTTTCTTCTTACATGTGGACCAGTGGATATCAGTGGCTGCCGTGAACCGTCACAGCTAAACGCACTTCATGTAGCTGTTCTACAAGGTTCTGTCATACACCTCCACTTTAGACTTCATCTGCACTGTGTGAAGCGCAGAGCGAGAAATGAGCAGAAGTGTAatttatttcagtattatttGCCTGCCTCAGACTGATTTGGCGTTTCGTTTGGAGTCTTAAGATGCATGACTTGAGGAAATAGGAATATTTCAGTGCTGTTTGTAAGAAAAGCGTACATTATCATCAGATAGATGAGATGTGGATTCTTCACAAACTTTATAAGTTTTGCCtgcttaaaataatatatatatacttggaAAATAACTTTTAATTGCCTAATCCCTTTACATCAAAGGAAAGCCAtgttatgtaaataaaaacatattttccatCAG
>TCONS_00008165
ATGCAGCGGAACCGGAGAAATCCTGCTCTGCTCTGGTGTGTGATGCTGAGCGCGTGCTGGACGCCGCTGGAGGTGCGGGGGTCCCAACCGGAGATTCCCCTATCAGTGGTGAAACTCTGGGCTTCAGCGTTTGGTGGTGAAATAAAATCAATAGCTTCAAAATACTCAGGATCTCAGCTCTTACAGAAGAAATACAAGGAGTATGAGAAGTCGGTGCGAATTGAGGAGATCGACGGCGCAAAATTGGTGAAAAATCTGGCGCAGAACATGGAGGAGATGTTTCGGAAAAAAGCGGAGGCCACACGAAGGCTCGTCGAAGCGGCAGAAGAAGCTCATCTTCAGCATGAAGAAAACCCAGACCTACAGTATGAGTATTTCAACGCAGTGCTGATAAACGAGGTGGATGAGGATGGGAATAGCGTGGAGCTGGGAGGAGAGTTTCTCCTGGAACCCAACGATCATTTTAATAACCTATCCGTCAACCTCAGCCTCAGCGTGGTGCAGGTGCCAACCAACATGTACAATAAAGATCCTGACATAGTCAATGGAGTTTACTGGTCGGAAGCCTTGAACAAAGTTTTCGTGGATAACTTCAGGAGAGACCCAACCCTCATCTGGCAGTACTTTGGAAGCGCTAAAGGTTTTTTCCGACAATACCCAGGCGTGAAATGGTATCCTGACGAACACGGCGTCATTGCATTTGATTGCAGAAACAGAAAATGGTATATCCAAGCAGCCACTTCACCTAAAGATGTTGTGATTCTAGTGGACGTCAGTGGCAGTATGAAGGGTTTAAGACTGACTATAGCCAGACAGACGGTTGCTTCAATACTGGACACACTCGGCGATGATGACTTCTTCAACATTATTGCATACAACCAAGAGATCCATTACGTGGAGCCCTGTCTAAACGGCACTCTGGTTCAAGCTGACAGTACTAATAAGGATCACTTTAAAGAGCATCTGGACAAGTTGTTCGCCAAAGGAATCGGACTCCTGGGCAATGCACTGAGCGAGGCTTTCACTATCTTAAATGAGATTAATCAGACGGGCCGTGGAAGTTCATGTAGTCAGGCGATCATGCTGATAACAGATGGAGCCACTGAAATGTACGATGATGTTTTCGCCAAATATAACTGGCCTGAACGTAAGGTCCGTATATTCCCATACCTGATTGGCCGTgaatctgcatttgctgataACCTAAAATGGATGGCGTGTGCCAATAAAGGTTACTTTAGTCAGATCTCCACACTGGCTGACGTTCAGGAGAATGTGATGCGGTATTTACATGTGATGAGCAGACCTAAAGTTATCGACCACGAACATGACACAGTGTGGACTGAGGCCTACGTCGACAGCGCACAGCTTGGAGAGAATAAAGGTCCAAACCCGATGACCACAGTGGCCATGCCTGTGTTTAGCACCAAGAATGAAACGAAAAACCAAGGCATCCTGCTGGGCGTCGCGGGCACTGATATCCCCATTCAGGAGCTAATGAAAGTCATCCCAAAACACAAGCTAGGAATACACGGATATGCTTTTGCCATCACCAGTAATGGATATCTCCTGTTGCACCCTGACCTGAGGCCCCTGTACCAGGAGGGCCAGAAGAGGAAGAAACCCAGTTACAGCAGTGTGGACCTGTCCGAGGTGGAGTGGGAGGACACAGAGGATGTTtTGCGTACAGCGATGGTGAACAGGAAAACTGGCACTTTCTCAATGGAAGTAAAAAGAACAGTGGACAAAGGGAAACGAGTCTTGACGATGCACAATGATTATTACTACACAGATATTAAAGGAACTCCATTTAGTGTAGGAGTGGCACTCTCTCGAGGACATGGAAAATACTTCTTTAAAGGGAATGTTTCACTAGAAGCTGgtcTACATGATCTGGAGCAGCCGGATGTAGCCCTTGCTGATGAATGGACGTACTGTACCACAGAAGAGCATCATGAGCATCGACACCTGACTCAAGTTCAGGCCATCAAAATCTACATGACCAGCCGGAAACCACATTTCAAGTGTGACAGAGAGCTGATTCAGCAGGTTCTGTTTGATGCTGTGGTCACCGCTCCTGTAGAAGCCTACTGGACTGGACTGGCCCTCAATAAATCTGAGAACTCAGATAAAGGGGTTGAGATTGCTTTTCTCGGCACCCGGACTGGCCTTTCACGTACCAACTTGTTTGTAGTTCCTGAGCAACTGACCAATCGAGATTTCCTCACTGCTGAAGATAAGGAGGGCGTCTTTAACGCTGATCACTTTCCTCTGTGGTATAAAAGAGCAGCAGAGCAGGTGCCCGGCACATTTGTGTACTCCATTCCCTTCAGTTCAGGTGGTGAAAATAAGAGTGTGGTTTTGGCAAGCACTGCTATCCAGCTTCTCGATGACAGAAAGTCTCCTATTGTGGCAGCTGTGGGAATTCAAATGAAGCTGGAATTCTTTCAGAGAAAATTCTGGACCGCTAGTCGGCAGTGTAATGCTCTGGATGGGAAATGCACCATCAGTTGTGATAATGAGGACATTAAATGCTATCTCATAGACAACAATGGCTTCATCCTGGTCTCTGAAGACACTTCTCAGACaaacctcttctttggaaaagtGGAAGGAGCCGTCATGAATAAACTGCTTCTGATGGGCTCGTTTAAAAAGATTAATTTGTATGACTATCAGGCTCTGTGTAAGGAGTACGCAGGCAGCAGTGACAGCGCACGCACTTTACTGGATCCCTTCACCACTGTGAAATGGCTCTTGACAGAACTTGTCATATTTCTGCTGGAGTTTAACCTGTATAGCTGGTGGAACTGTGACTCCACAGTCAAAGCTCAGAGATCTCAGAGGACAATGATGGTGCCCTGTGACACAGAATACCCAGCCTTCGTCTCAGAGCGTACCATCAAAGAGACAACTGGCAACATTGACTGCAATGGCTGTATACGGACATTTGTGATTCAGCAGATTCCCAGCAGTAACCTGTTTATGGTGGTGGTTGAGAATAAATGTGACTGTGGCTCTGCTCTTCCAGTTACCATGGAGCCCATTGAGATCATTTATATCCTTTAA

Function

symbol description
cacna2d3 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D3 (calcium voltage-gated channel auxiliary subunit alpha2delta 3).

GO:

id name namespace
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04921 Oxytocin signaling pathway
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-030616-133 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D3 (calcium voltage-gated channel auxiliary subunit alpha2delta 3).

Ensembl:

ensembl_id ENSDARG00000078760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008164 False 4324 mRNA 0.47 38 36688794 36765834
TCONS_00008165 True 3069 mRNA 0.47 35 36691801 36765376

Neighbor

gene id symbol gene type direction distance location
XLOC_004269 NA coding downstream 1633 36484392 ~ 36687161 (-)
XLOC_004271 CR457444.8 coding downstream 61472 36620717 ~ 36627322 (-)
XLOC_004270 NA coding downstream 119528 36568924 ~ 36569266 (-)
XLOC_004268 zbtb40 coding downstream 213670 36422233 ~ 36475124 (-)
XLOC_004267 psma5 coding downstream 337801 36342997 ~ 36350993 (-)
XLOC_004273 cacna1da coding upstream 27639 36793473 ~ 36964002 (-)
XLOC_004274 BX248521.2 coding upstream 244327 37010161 ~ 37015507 (-)
XLOC_004275 BX248521.1 coding upstream 272586 37038420 ~ 37044539 (-)
XLOC_004276 NA coding upstream 319786 37085620 ~ 37095534 (-)
XLOC_004277 NINJ1 coding upstream 339806 37105640 ~ 37120954 (-)
XLOC_004063 CR854846.1 misc downstream 20561116 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23997103 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 24067027 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 24097498 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 24175532 12512966 ~ 12513262 (-)
XLOC_004264 NA non-coding downstream 442038 36242059 ~ 36246756 (-)
XLOC_004257 NA non-coding downstream 947350 35578730 ~ 35741444 (-)
XLOC_004278 CR352285.1 non-coding upstream 531667 37297501 ~ 37298097 (-)
XLOC_004279 CR352285.2 non-coding upstream 533537 37299371 ~ 37299485 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017252 cacna2d3,LOC103362818 coding CM030122.1 CM030122.1 51948217 ~ 51985368 (+)