XLOC_004257


Basic Information

Item Value
gene id XLOC_004257
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35578730 ~ 35741444 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008836
GAAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGGTTCCCAAGATATCCACATCTGAAGAGAGCCAGGCTGGTGACGGATCAATGCCGTTCTGTGTCAACGCTCTATACCCTGTTCCCTGTCAGCCTGCATAAAGAGTCACTTGAGAGGCATGAAAGTCCAGGAGAGATCAGGAGGCAGGAAATAATCGAAGCCGTTCTTCGACAGACTCGAACCCTGCcatcgtggtcagctcctctctgcatctcaagtccacagACGTACAGAACCCCAGCTACTGAACAAACTAGTAACAACAGGAAAGCCGTCCATGTGGAGGTCAGTGGTCAGCTGTGAGCCAGGATGAGGTCTGGACGCCTCTGAAATGCATTACTGAGAACTGGTGAATGAGCAGCACACCATAGAGCGCTGCTGCAGAAAGAAAATGGaacagaaaagagaaaaaaaaaaacgaactttGGGAAAGATGTCTAAACTCTGCTTTGAGTTATTTGGAGCGAAGATGAAGACCTGTGAATGCTGAAGTTCACAGATACAACAACACCTGGAGCCTTGGGGCTTGAGCGCACCACAGGAACGCAGGCCTATTATTTCGACAGTCATGAAACGCTCTCCGACGATATTTCTGCAGGTCGAGCCCTAGAGGGGAGATTCGATGTCAATACAGCAAACCGGATAAAAGACAATGGCGTGGTGGAAACAAGTTCACAGGCTCAATCAGACTCCACATACAGTCTTGACATCTGAAATGCCTTTTATTTGCACATAAAGGATGGGGTGAAGGGCTCCGGGACAGTTGTGTAGACCTGCCTCCTCCAGAAGCCCTCGCTGAAAAGAGAAGTTGTCCAAGTTGTCAAGAGTTCGCCCGGAGGGAGACAAAGTCGGTCTGCTTTCATTTGCAGACATCTTCCATTTGACCTCTGCCAAGTCGGCTTTGAAAACAGTTTTATTGCAGGTCGAATGGTTTGACGCCGCTGAAAGGGACAGATTCGCCTTCATTCTCCGCTTCTGTCCATTCAGCCTCTTCCCCAATCTCACCGGCAGGCTGCATTGTGACAATTTTGCAGAGAACGTAGATTAAATGGGAGGCTAATAAAGAATGTGGGCCGACGAGGTGCAGCAATGCGAAGCCTGAAATTagctttttcaatttttttttttttgggggggggggacaATAGTGACTTGGGTTTTCATTAGTCGTTTTGAGTTGAAGGTTTTCAAATAACTTCATGATGTCAGAGACAAAGATGTATAGGGCTCTGTAAACTGACAGGACACTTCAGTCATGCTGATGGCCcagtttttttcttcctttctgaACATCCTATAGATTCTGCTGACCATGAAGGAAACTTTAGTGTAGTTGGTAGTTTTAAAACTTGCCTGTAAATGGGAAATTTGCTGATTAAACATCAATTTTTCAACCGTGAGACATATTGAATgtatattaaacacaaatttaagaagcatattaaaaaaatctaaataatcaaTGATTACTGAGTTTGCATAATTTTCAACCCAGATTCATTTTGAagacgtacctctatatacatttctgtagaccgcgaaatacatcccagaaggtacgttttttttttttttcagtttttgttttcgcaaaccCAAGGCCGCTGTCTATGCTTTATCAAAATTCTTTCATGAATGCcatcgcgcctgctgttctcgtgttcACCCACCAGGGACCACTGTTGACAGACTGTTTGACttactgaccgattgactgacccaacctcctgcttccctaaacccaaccaatttcaTTGACTGACCCgcccatccacttccctaaactcaagcaacacttttcaaaagcaatccagaaaaataaaagcccttatctgatgttttcagattttaccacattctcaccctggtatttactgatttattttttcacttctgtttttgtcttacctgctttctggaatcgttcttcaccggacttgaaCTCCGTCATAATAGTCAACTcct
>TCONS_00008483
AGCTGCAGAAAGAAAATGGaacagaaaagagaaaaaaaaaaacgaactttGGGAAAGATGTCTAAACTCTGCTTTGAGTTATTTGGAGCGAAGATGAAGACCTGTGAATGCTGAAGTTCACAGATACAACAACACCTGGAGCCTTGGGGCTTGAGCGCACCACAGGAACGCAGGCCTATTATTTCGACAGTCATGAAACGCTCTCCGACGATATTTCTGCAGGTCGAGCCCTAGAGGGGAGATTCGATGTCAATACAGCAAACCGGATAAAAGACAATGGCGTGGTGGAAACAAGTTCACAGGCTCAATCAGACTCCACATACAGTCTTGACATCTGAAATGCCTTTTATTTGCACATAAAGGATGGGGTGAAGGGCTCCGGGACAGTTGTGTAGACCTGCCTCCTCCAGAAGCCCTCGCTGAAAAGAGAAGTTGTCCAAGTTGTCAAGAGTTCGCCCGGAG
>TCONS_00008484
AAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGGTTCCCAAGATATCCACATCTGAAGAGAGCCAGGCTGGTGACGGATCAATGCCGTTCTGTGTCAACGCTCTATACCCTGTTCCCTGTCAGCCTGCATAAAGAGTCACTTGAGAGGCATGAAAGTCCAGGAGAGATCAGGAGGCAGGAAATAATCGAAGATCACTTAACCTGCCAGAAAAGGGTCTGCCTATGGATGTTAATAAAGCAACGATCATTTGCATTGATGCCGAGTGATGTGGTTTATCGTGAAAAGGCTGGCATCTGTCATCGAGAAGCTTTCCTGACACTGAAAAATCCCAGTGCACCACACTATTGACTGATTTCCCACATTCACAGAGGCAACATTGACAAAACCAAGACTTCTGTGGGATATACAGGCTGCAGGAATGAGAAATATACATACGCAATCAAGCAAATGAACCTTTGGGTAGAAGTAAACAACCTGCGGTCACTGTATTGGAGAGTTTGTTGAGGCAGGTTAAACAAACGTCGCTTCGAATCTACAACATCTGGACGTTCAGAAATGCTCTGAGATTCTTGAGtggtatttttaaaaagccacATTTTCATGAAGCAAAGCAGCCAGGTATAAATTCGCTCAAACAGTAAGTGGagtaattagtagtttattgaatTGAACCCGTTTGACCCGAGTCAGCATTATCTGAAGTCATTTGTTGTTGTAGTATCGCTAATGGTCTTCAATTACGGAGGAAAAAATTGTGTTATTGGGGGGTTTGTGTGTGAAACTGCAGTTGAAACATGTGTAATGGGTTAAAGCAGAGAAAGACGACTTTCAATTGTAGGCATGTAACCTGATTCAGTCTTTTGAGAACGTTTGCCATGCTTGTGTGGTTTTTATAGAAGCAAAGGACGATATGAGTCCCATACAGCTATAGAGCTAACATTTGTGTTGGCCAACAGCTGGGTGTATGCATTTCCTCAATTCCCTCACAAAGTGCATGTACGAAACACACCAGTGCATGCTAACAATGACTTTTATACACTGCACggctaataaacagttatttgTTGTCAGTTCAATTTGATAGTGTGATACGTTACATCCATGTGACTTTACAAGAGTGGCTGTTTATCTTTATGTTTCTAGATTAGGGTCGCATGaagttaaaataaagttttttacatgttattatCAGTATCTATAAGCCAGTGCGCACTAAAACAGTGACAAtatttgtgtttataagatgtaaTACCAATATAAACATGttaagcttgtagtttgtcacttccacctaaataaATCAAGGGTTTTAATCAC
>TCONS_00008837
GAAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGGTTCCCAAGATATCCACATCTGAAGAGAGCCAGGCTGGTGACGGATCAATGCCGTTCTGTGTCAACGCTCTATACCCTGTTCCCTGTCAGCCTGCATAAAGAGTCACTTGAGAGGCATGAAAGTCCAGGAGAGATCAGGAGGCAGGAAATAATCGAAGGTAAGGGGCACAACCTTTTCTAAAACCGCCAAGACTGTTACCTCTGACATTCACCAAGCAGGTTTGGCCTAGAGATCACTTAACCTGCCAGAAAAGGGTCTGCCTATGGATGTTAATAAAGCAACGATCATTTGCATTGATGCCGAGTGATGTGGTTTATCGTGAAAAGGCTGGCATCTGTCATCGAGAAGCTTTCCTGACACTGAAAAATCCCAGTGCACCACACTATTGACTGATTTCCCACATTCACAGAGGCAACATTGACAAAACCAAGACTTCTGTGGGATATACAGGCTGCAGGAATGAGAAATATACATACGCAATCAAGCAAATGAACCTTTGGGTAGAAGTAAACAACCTGCGGTCACTGTATTGGAGAGTTTGTTGAGGCAGGTTAAACAAACGTCGCTTCGAATCTACAACATCTGGACGTTCAGAAATGCTCTGAGATTCTTGAGtggtatttttaaaaagccacATTTTCATGAAGCAAAGCAGCCAGGTATAAATTCGCTCAAACAGTAAGTGGagtaattagtagtttattgaatTGAACCCGTTTGACCCGAGTCAGCATTATCTGAAGTCATTTGTTGTTGTAGTATCGCTAATGGTCTTCAATTACGGAGGAAAAAATTGTGTTATTGGGGGGTTTGTGTGTGAAACTGCAGTTGAAACATGTGTAATGGGTTAAAGCAGAGAAAGACGACTTTCAATTGTAGGCATGTAACCTGATTCAGTCTTTTGAGAACGTTTGCCATGCTTGTGTGGTTTTTATAGAAGCAAAGGACGATATGAGTCCCATACAGCTATAGAGCTAACATTTGTGTTGGCCAACAGCTGGGTGTATGCATTTCCTCAATTCCCTCACAAAGTGCATGTACGAAACACACCAGTGCATGCTAACAATGACTTTTATACACTGCACggctaataaacagttatttgTTGTCAGTTCAATTTGATAGTGTGATACGTTACATCCATGTGACTTTACAAGAGTGGCTGTTTATCTTTATGTTTCTAGATTAGGGTCGCATGaagttaaaataaagttttttacatgttattatCAGTATCTATAAGCCAGTGCGCACTAAAACAGTGACAAtatttgtgtttataagatgtaaTACCAATATAAACATGttaagcttgtagtttgtcacttccacctaaataaATCAAGGGTTTTAATCAC
>TCONS_00008838
TTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGAGATGAGACTTCCAGTGCGTCG
>TCONS_00008124
AGTGAAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGATATGTGGCATCATATCTATAAATATGGGTGTTCTCAAGAGGGCTGCCTAGTGACATGGGATTATCATTTGACAAAGCAACCAGTCCTGTCTGACTATTTTCTCCTGTCAGACCAGGTCGCGGACACTCCTCTGAGATTATTGAATGTATCATTAAGCATCCCTAATTGTAAACATTTTCCAAATGCGTCTTCACAGAAGGAACCCAAATTGTTGCATTGTGACAATATACGTAGTTTCAGGATTACAGGCTTTGATTTTTATCCTCAACAGACAGCAGTAAATAACTCATCAGGTCTGTTGCAGGGATTTGATTTGGGACTCAATAGCGTGTCTGTTCATCTTGCCACTGCGAATGTCATCAAGAAACATCTGGCCTGGAGCAGAGACAATGGGAAAAGTTTCCTTCCAACCGAGTCATGACTTAAATGATGTGAACGTGAGAACTAACAAAAGCATGAATATATGCATGAATTATTGGCtacactttttatatttttattcagattgTGCAGCTTTTCTTGAGGATTTAAGGCTTGTTTTTAAGTCGTGCATTTCCTGAAGGACTTTAGATGGGTTGCTACTGATGTGAAGTCAGAAAAACGTTCTAAGCTTGCTTTTCTTAAACGTGTCTTGGCTTTGAACGCTGACAGTGTTTACCAAACAGTTCATTTTTTTTGTTCCAAGTTTTGTAGGAAAGCTGCTAATCCATATATATTCAACAAACCCATTTGGGATTGGAAttgataacttttttttcttttcaaggtCATTTCACGACCTGTAGCCATTTCCGTTCGTTCTGTAGAGTGTGCGTTCATGCCTTACTATCACTCCTGCTTCACTCTTTCTATCTGCCCAACACTTTTCATTAAAAGTCATAGGTTTGGCTTTGGGGCACTGATCAAATGGGAAAAGGAAATACATTTTCATTccttgcagatatttcagaagtACCTTATATTTACATATAGATTGAGTATTTATCGGCAAAGCTGCAGTGAGGGCAGATTCTCTTGTAGTTCATTTTCTGAGGCTTTGttggatttatgtttttttaaatggattgaaGATGTTGAGTGTGCAGTTGTAATTATTTGAACTGGAT
>TCONS_00008123
AGTGAAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTAAGTAGTCTACACCCACTAAAATTACACAGAACATTAAAAACACATCCGAAGCTATTAATCtgggtccgtgtacgttttgtatTTAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGATATGTGGCATCATATCTATAAATATGGGTGTTCTCAAGAGGGCTGCCTAGTGACATGGGATTATCATTTGACAAAGCAACCAGTCCTGTCTGACTATTTTCTCCTGTCAGACCAGGTCGCGGACACTCCTCTGAGATTATTGAATGTATCATTAAGCATCCCTAATTGTAAACATTTTCCAAATGCGTCTTCACAGAAGGAACCCAAATTGTTGCATTGTGACAATATACGTAGTTTCAGGATTACAGGCTTTGATTTTTATCCTCAACAGACAGCAGTAAATAACTCATCAGGTCTGTTGCAGGGATTTGATTTGGGACTCAATAGCGTGTCTGTTCATCTTGCCACTGCGAATGTCATCAAGAAACATCTGGCCTGGAGCAGAGACAATGGGAAAAGTTTCCTTCCAACCGAGTCATGACTTAAATGATGTGAACGTGAGAACTAACAAAAGCATGAATATATGCATGAATTATTGGCtacactttttatatttttattcagattgTGCAGCTTTTCTTGAGGATTTAAGGCTTGTTTTTAAGTCGTGCATTTCCTGAAGGACTTTAGATGGGTTGCTACTGATGTGAAGTCAGAAAAACGTTCTAAGCTTGCTTTTCTTAAACGTGTCTTGGCTTTGAACGCTGACAGTGTTTACCAAACAGTTCATTTTTTTTGTTCCAAGTTTTGTAGGAAAGCTGCTAATCCATATATATTCAACAAACCCATTTGGGATTGGAAttgataacttttttttcttttcaaggtCATTTCACGACCTGTAGCCATTTCCGTTCGTTCTGTAGAGTGTGCGTTCATGCCTTACTATCACTCCTGCTTCACTCTTTCTATCTGCCCAACACTTTTCATTAAAAGTCATAGGTTTGGCTTTGGGGCACTGATCAAATGGGAAAAGGAAATACATTTTCATTccttgcagatatttcagaagtACCTTATATTTACATATAGATTGAGTATTTATCGGCAAAGCTGCAGTGAGGGCAGATTCTCTTGTAGTTCATTTTCTGAGGCTTTGttggatttatgtttttttaaatggattgaaGATGTTGAGTGTGCAGTTGTAATTATTTGAACTGGAT

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0048477 oogenesis biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0070336 flap-structured DNA binding molecular_function

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008836 False 2260 lncRNA 0.43 7 35578730 35741441
TCONS_00008483 False 462 lncRNA 0.47 2 35579857 35585628
TCONS_00008484 False 1581 lncRNA 0.40 4 35664551 35741440
TCONS_00008837 False 1656 lncRNA 0.40 3 35664551 35741441
TCONS_00008838 False 314 lncRNA 0.40 3 35720448 35741436
TCONS_00008124 False 1407 lncRNA 0.38 4 35725245 35741444
TCONS_00008123 True 1496 lncRNA 0.38 3 35725245 35741444

Neighbor

gene id symbol gene type direction distance location
XLOC_004256 sema3fb coding downstream 2900 35447417 ~ 35575830 (-)
XLOC_004255 NA coding downstream 137313 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 coding downstream 353591 35225022 ~ 35225139 (-)
XLOC_004253 traip coding downstream 406962 35162684 ~ 35171768 (-)
XLOC_004252 chchd4a coding downstream 794792 34779610 ~ 34783938 (-)
XLOC_004258 arl8bb coding upstream 3474 35744918 ~ 35756468 (-)
XLOC_004259 bhlhe40 coding upstream 18208 35759652 ~ 35763323 (-)
XLOC_004260 itpr1b coding upstream 35885 35777329 ~ 36020005 (-)
XLOC_004261 setmar coding upstream 295632 36037076 ~ 36040549 (-)
XLOC_004262 brk1 coding upstream 300173 36041617 ~ 36156971 (-)
XLOC_004063 CR854846.1 misc downstream 19451052 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 22887039 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 22956963 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 22987434 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23065468 12512966 ~ 12513262 (-)
XLOC_004249 NA non-coding downstream 1001624 34550847 ~ 34577106 (-)
XLOC_004247 BX548160.2 non-coding downstream 1112217 34466395 ~ 34466513 (-)
XLOC_004245 BX548160.1 non-coding downstream 1223068 34355544 ~ 34355662 (-)
XLOC_004264 NA non-coding upstream 500615 36242059 ~ 36246756 (-)
XLOC_004269 NA non-coding upstream 742948 36484392 ~ 36687161 (-)
XLOC_004270 NA non-coding upstream 827480 36568924 ~ 36569266 (-)
XLOC_004271 CR457444.8 non-coding upstream 879273 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 1268717 37010161 ~ 37015507 (-)
XLOC_004244 NA non-coding downstream 1220041 34315525 ~ 34358689 (-)

Expression


Co-expression Network