RNA id: TCONS_00008836


Basic Information

Item Value
RNA id TCONS_00008836
length 2260
lncRNA type inter_gene
GC content 0.43
exon number 7
gene id XLOC_004257
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35578730 ~ 35741444 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCTTTGAGTTTGTTTGAAACcaggtgtaagtgtgtgtgtgtcaggttttGAAAATGATTTAAGCCTAAAAACCgtgtcatatttaatatttaagcgCATTTATTATAATAACTCTAGTAATTAATCAAAGTATATGTGTTGGGTGGTTCTTTTGTGTAAAGTCACTCTATCGAGCTGTTAAGGCCCAACTGCCTAGTCGTTCAGGTGAACGCAGTGAGCCGAAATGCAGTACTAACGACTGCATGGCGCTAACGACAAAGATGGCCGAAATGAAAGCTGAGAAAAAGGAGTGAGGTTCCCAAGATATCCACATCTGAAGAGAGCCAGGCTGGTGACGGATCAATGCCGTTCTGTGTCAACGCTCTATACCCTGTTCCCTGTCAGCCTGCATAAAGAGTCACTTGAGAGGCATGAAAGTCCAGGAGAGATCAGGAGGCAGGAAATAATCGAAGCCGTTCTTCGACAGACTCGAACCCTGCcatcgtggtcagctcctctctgcatctcaagtccacagACGTACAGAACCCCAGCTACTGAACAAACTAGTAACAACAGGAAAGCCGTCCATGTGGAGGTCAGTGGTCAGCTGTGAGCCAGGATGAGGTCTGGACGCCTCTGAAATGCATTACTGAGAACTGGTGAATGAGCAGCACACCATAGAGCGCTGCTGCAGAAAGAAAATGGaacagaaaagagaaaaaaaaaaacgaactttGGGAAAGATGTCTAAACTCTGCTTTGAGTTATTTGGAGCGAAGATGAAGACCTGTGAATGCTGAAGTTCACAGATACAACAACACCTGGAGCCTTGGGGCTTGAGCGCACCACAGGAACGCAGGCCTATTATTTCGACAGTCATGAAACGCTCTCCGACGATATTTCTGCAGGTCGAGCCCTAGAGGGGAGATTCGATGTCAATACAGCAAACCGGATAAAAGACAATGGCGTGGTGGAAACAAGTTCACAGGCTCAATCAGACTCCACATACAGTCTTGACATCTGAAATGCCTTTTATTTGCACATAAAGGATGGGGTGAAGGGCTCCGGGACAGTTGTGTAGACCTGCCTCCTCCAGAAGCCCTCGCTGAAAAGAGAAGTTGTCCAAGTTGTCAAGAGTTCGCCCGGAGGGAGACAAAGTCGGTCTGCTTTCATTTGCAGACATCTTCCATTTGACCTCTGCCAAGTCGGCTTTGAAAACAGTTTTATTGCAGGTCGAATGGTTTGACGCCGCTGAAAGGGACAGATTCGCCTTCATTCTCCGCTTCTGTCCATTCAGCCTCTTCCCCAATCTCACCGGCAGGCTGCATTGTGACAATTTTGCAGAGAACGTAGATTAAATGGGAGGCTAATAAAGAATGTGGGCCGACGAGGTGCAGCAATGCGAAGCCTGAAATTagctttttcaatttttttttttttgggggggggggacaATAGTGACTTGGGTTTTCATTAGTCGTTTTGAGTTGAAGGTTTTCAAATAACTTCATGATGTCAGAGACAAAGATGTATAGGGCTCTGTAAACTGACAGGACACTTCAGTCATGCTGATGGCCcagtttttttcttcctttctgaACATCCTATAGATTCTGCTGACCATGAAGGAAACTTTAGTGTAGTTGGTAGTTTTAAAACTTGCCTGTAAATGGGAAATTTGCTGATTAAACATCAATTTTTCAACCGTGAGACATATTGAATgtatattaaacacaaatttaagaagcatattaaaaaaatctaaataatcaaTGATTACTGAGTTTGCATAATTTTCAACCCAGATTCATTTTGAagacgtacctctatatacatttctgtagaccgcgaaatacatcccagaaggtacgttttttttttttttcagtttttgttttcgcaaaccCAAGGCCGCTGTCTATGCTTTATCAAAATTCTTTCATGAATGCcatcgcgcctgctgttctcgtgttcACCCACCAGGGACCACTGTTGACAGACTGTTTGACttactgaccgattgactgacccaacctcctgcttccctaaacccaaccaatttcaTTGACTGACCCgcccatccacttccctaaactcaagcaacacttttcaaaagcaatccagaaaaataaaagcccttatctgatgttttcagattttaccacattctcaccctggtatttactgatttattttttcacttctgtttttgtcttacctgctttctggaatcgttcttcaccggacttgaaCTCCGTCATAATAGTCAACTcct

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0048477 oogenesis biological_process
GO:0043900 regulation of multi-organism process biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0070336 flap-structured DNA binding molecular_function

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008835 lncRNA downstream 137313 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008834 lncRNA downstream 1001729 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008833 lncRNA downstream 1220041 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 1323510 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 1352932 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008839 lncRNA upstream 500618 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008152 lncRNA upstream 549367 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008841 lncRNA upstream 742951 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 742951 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 742951 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008121 mRNA downstream 2900 35447417 ~ 35575830 (-) False XLOC_004256
TCONS_00008120 mRNA downstream 2900 35447417 ~ 35575830 (-) False XLOC_004256
TCONS_00008122 mRNA downstream 2939 35448551 ~ 35575791 (-) True XLOC_004256
TCONS_00008117 mRNA downstream 406962 35162684 ~ 35171768 (-) False XLOC_004253
TCONS_00008118 mRNA downstream 407568 35162825 ~ 35171162 (-) True XLOC_004253
TCONS_00008125 mRNA upstream 3477 35744918 ~ 35756468 (-) True XLOC_004258
TCONS_00008126 mRNA upstream 18211 35759652 ~ 35763323 (-) True XLOC_004259
TCONS_00008127 mRNA upstream 35888 35777329 ~ 36020005 (-) False XLOC_004260
TCONS_00008128 mRNA upstream 36910 35778351 ~ 35970966 (-) False XLOC_004260
TCONS_00008129 mRNA upstream 36910 35778351 ~ 36001495 (-) False XLOC_004260
TCONS_00008119 other downstream 353591 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1112217 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1223068 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 1612458 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2207363 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1557930 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 2433630 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 3206546 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 3348434 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 4441240 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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