RNA id: TCONS_00008839


Basic Information

Item Value
RNA id TCONS_00008839
length 543
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id XLOC_004264
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36242059 ~ 36246756 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCTTCAGCACTACATCCTCAGCGACGGCAATAACAATATTTTCATTTCGCTAAGACAACAAAGACAATCACTACTTCTTCTGAAATACTACAAAATATCTGGACAGTTTCCAGCGGCGTCTTCCATGTCTGCTGTCCCTCGTCGTCCTCTCCGTCTCCTGCGTCCCTCAGGTCGATCTCAGTCTCACTGGAGTCCACACTGCGCATCATGGTGCCCGTCATCAATATGAGGCTCAAGAGGTCATAAAGACAGCATCAAAACAGGCATAAACAgcctcacacatacacacagtgaaTGGAGAGCCGCATCGCTGTCCTGAAGCTGAAACGGAGATCTGGGATATATTAGGAAAGTCAACGTGCCCTCGCAGGCATTCCCAAACAGGCCCCAATGGGGAGATGCCAACCCCTACTGATACTAATGCTATAAATACTCCATTAGTGACTGGACCAATGCAGAGAGCTGTTCACCTTTGCTCACACTGCCTGTCTCGTGGATTGTGATGTCAGACCATCgctttttaataaatgttctttTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008124 lncRNA downstream 500615 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 500615 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008836 lncRNA downstream 500618 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008837 lncRNA downstream 500618 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008484 lncRNA downstream 500619 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008152 lncRNA upstream 44052 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008841 lncRNA upstream 237636 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 237636 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 237636 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008842 lncRNA upstream 322168 36568924 ~ 36569266 (-) True XLOC_004270
TCONS_00008144 mRNA downstream 11896 36215698 ~ 36230163 (-) False XLOC_004263
TCONS_00008145 mRNA downstream 11913 36215780 ~ 36230146 (-) True XLOC_004263
TCONS_00008143 mRNA downstream 85088 36048886 ~ 36156971 (-) True XLOC_004262
TCONS_00008140 mRNA downstream 85124 36042269 ~ 36156935 (-) False XLOC_004262
TCONS_00008142 mRNA downstream 191055 36048579 ~ 36051004 (-) False XLOC_004262
TCONS_00008146 mRNA upstream 7528 36254284 ~ 36279664 (-) False XLOC_004265
TCONS_00008147 mRNA upstream 8308 36255064 ~ 36263886 (-) False XLOC_004265
TCONS_00008148 mRNA upstream 11782 36258538 ~ 36279620 (-) False XLOC_004265
TCONS_00008149 mRNA upstream 16856 36263612 ~ 36279602 (-) True XLOC_004265
TCONS_00008150 mRNA upstream 33767 36280523 ~ 36341189 (-) False XLOC_004266
TCONS_00008119 other downstream 1016920 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1775546 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1886397 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2275787 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2870692 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1052615 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1928315 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2701231 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2843119 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3935925 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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