RNA id: TCONS_00008145


Basic Information

Item Value
RNA id TCONS_00008145
length 1645
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_004263
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36215698 ~ 36230163 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTTGTGACCATGTGAGTGCCAGCAGAGAGCACTAAATAAACTCAAACATCCTCAAATTACTTCTAAAAATCAGTTAAGTAAAAACGCCATCATGTCGTCCTTCTTCATAAAGAAAAAACTCGTCTCTTCAGCAACGAATAAAGGAGATTTAAAACGAAAGAGTAATACAGACGACGGCAAAGGGAGATCCAAAAGGTTcagtaaacgaatgaatgaagaaatCTCGAGTGACTCAGAAAATGAAAGTGCTGATCCAGGCAGAAAACAACAAGAGAATGAAGAAGACGAGATCGAGGAGACGGCGCAGGAGAAGAAGCTCCGCCTGGCCAAACTCTACCTGGATCAGCTGAGAGAGGAAGAGGACAAGAAAGCAGAGGAAGAGTCGTTTGAAGCGGATCTCATTGCTGGAAGACTGCAGGAGGATGTGCTGGAGCAGAAAGGCAAACTGCAAAGACTGATCGCCAAAGAACTCAAAGCTCCAGATCCAGCAGAGATCAGGCTATTGAGAGGACACAAACTACCCGTCACATGTCTCGTCATCACGCCAGATGAGAAACACATCTTCTCTGCCAGTAAAGACTGCTCCATCATCAAATGGGACGTGGAGAGCGGTAAAAAGGTGCAGAAGATCGCAGGAGGACGGAAGGGAACTGAAGATTGTCACACTGCTCACATCCTGTGCATGGCCATTTCATCTGATGGAAAATACCTGGCTAGCGGGGATATGAATAAACACATCATGATCTGGGATCCAGAGACATGTAAACATCTATTCAAGTTTACAGGACACAGAGGTGCCATATCGGGTTTGGCTTTTAGACGAGGGACTCATACTCTCTACAGTGCGTCACATGACCGCTCCATTAAAGTGTGGAGTGTGGATGAAAACGCCTATGTAGAAACTCTGTTTGGGCATCAGGATGCTATTACCGGTCTGGACTGTTTGAGCAGAGAGAGGTGTGTGACCACTGGAGGTCGAGACCGGACGGTCAGAGTCTGGAAGATAGCAGAGGAATCACAGCTCGTCTTTCATGGACATGAAGGCTCCATTGACTGTGTTCAGCTTATTAATGAAGAACACATGGTCACAGGTGGAGATGATGGCGCTGTGTCCATCTGGACGGTGAATAAGAAGAAGCCGCTGAGCTCAGTCAAGCAGGCTCATGGTGTGCGTGGCTCTGCAGGTCTGGAGCAGCCCTATTGGGTGTCATCAGTGGCGGCGCTGCACAACTCCGACACAGTGGCATCAGGCTCCCATAATTCCTCAGTGCAGCTGTGGAAGTGCGGACAGGGATTCAGAGGTCTGGAGCTGCTCTTCAGTGTACCAGTGaaCGGGTTTGTGAACAGTTTGAAGTTCTCGAACTCGGGGAAGTTTCTTGTGGCTGGAGTCGGACAGGAGCAcagATTGGGACGATGGTGGAGAATAAAGGAAGCTAAAAACGGACTGTATATAATTCCTCTTAAAAGACAGGCTAAAGAGCAAGAGGTTGTCCAGTAAAGCATGATTTTGGGCTTGAGTTTGGTATCAGAGaacttttaatttgttttctttacatGATGTAAAAGAGATGCTCAAATGTATATTAAGTTTATCTGTTTTATTACTCTTTACTTTCTACATAAAAGCACAAATGTGTTTGAA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060427-1 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

Ensembl:

ensembl_id ENSDART00000135888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008124 lncRNA downstream 474336 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 474336 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008837 lncRNA downstream 474339 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008484 lncRNA downstream 474340 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008839 lncRNA upstream 11913 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008152 lncRNA upstream 60662 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008841 lncRNA upstream 254246 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 254246 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 254246 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008143 mRNA downstream 58809 36048886 ~ 36156971 (-) True XLOC_004262
TCONS_00008140 mRNA downstream 58845 36042269 ~ 36156935 (-) False XLOC_004262
TCONS_00008142 mRNA downstream 164776 36048579 ~ 36051004 (-) False XLOC_004262
TCONS_00008139 mRNA downstream 169039 36041617 ~ 36046741 (-) False XLOC_004262
TCONS_00008146 mRNA upstream 24138 36254284 ~ 36279664 (-) False XLOC_004265
TCONS_00008147 mRNA upstream 24918 36255064 ~ 36263886 (-) False XLOC_004265
TCONS_00008148 mRNA upstream 28392 36258538 ~ 36279620 (-) False XLOC_004265
TCONS_00008149 mRNA upstream 33466 36263612 ~ 36279602 (-) True XLOC_004265
TCONS_00008150 mRNA upstream 50377 36280523 ~ 36341189 (-) False XLOC_004266
TCONS_00008119 other downstream 990641 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1749267 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1860118 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2249508 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2844413 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1069225 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1944925 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2717841 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2859729 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3952535 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_08953503_08960561.mRNA True 2010 mRNA 0.44 14 CI01000306 8953040 ~ 8960782 (-)