XLOC_004263 (rrp9)


Basic Information

Item Value
gene id XLOC_004263
gene name rrp9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36215698 ~ 36230163 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008144
AGAGCCTCCGGAAGCATGTGTTTGTGACCATGTGAGTGCCAGCAGAGAGCACTAAATAAACTCAAACATCCTCAAATTACTTCTAAAAATCAGTTAAGTAAAAACGCCATCATGTCGTCCTTCTTCATAAAGAAAAAACTCGTCTCTTCAGCAACGAATAAAGGAGATTTAAAACGAAAGAGTAATACAGACGACGGCAAAGGGAGATCCAAAAGGTTcagtaaacgaatgaatgaagaaatCTCGAGTGACTCAGAAAATGAAAGTGCTGATCCAGGCAGAAAACAACAAGAGAATGAAGAAGACGAGATCGAGGAGACGGCGCAGGAGAAGAAGCTCCGCCTGGCCAAACTCTACCTGGATCAGCTGAGAGAGGAAGAGGACAAGAAAGCAGAGGAAGAGTCGTTTGAAGCGGATCTCATTGCTGGAAGACTGCAGGAGGATGTGCTGGAGCAGAAAGGCAAACTGCAAAGACTGATCGCCAAAGAACTCAAAGCTCCAGATCCAGCAGAGATCAGGCTATTGAGAGGACACAAACTACCCGTCACATGTCTCGTCATCACGCCAGATGAGAAACACATCTTCTCTGCCAGTAAAGACTGCTCCATCATCAAATGGGACGTGGAGAGCGGTAAAAAGGTGCAGAAGATCGCAGGAGGACGGAAGGGAACTGAAGATTGTCACACTGCTCACATCCTGTGCATGGCCATTTCATCTGATGGAAAATACCTGGCTAGCGGGGATATGAATAAACACATCATGATCTGGGATCCAGAGACATGTAAACATCTATTCAAGTTTACAGGACACAGAGGTGCCATATCGGGTTTGGCTTTTAGACGAGGGACTCATACTCTCTACAGTGCGTCACATGACCGCTCCATTAAAGTGTGGAGTGTGGATGAAAACGCCTATGTAGAAACTCTGTTTGGGCATCAGGATGCTATTACCGGTCTGGACTGTTTGAGCAGAGAGAGGTGTGTGACCACTGGAGGTCGAGACCGGACGGTCAGAGTCTGGAAGATAGCAGAGGAATCACAGCTCGTCTTTCATGGACATGAAGGCTCCATTGACTGTGTTCAGCTTATTAATGAAGAACACATGGTCACAGGTGGAGATGATGGCGCTGTGTCCATCTGGACGGTGAATAAGAAGAAGCCGCTGAGCTCAGTCAAGCAGGCTCATGGTGTGCGTGGCTCTGCAGGTCTGGAGCAGCCCTATTGGGTGTCATCAGTGGCGGCGCTGCACAACTCCGACACAGTGGCATCAGGTGCCTCagGCTCCCATAATTCCTCAGTGCAGCTGTGGAAGTGCGGACAGGGATTCAGAGGTCTGGAGCTGCTCTTCAGTGTACCAGTGaaCGGGTTTGTGAACAGTTTGAAGTTCTCGAACTCGGGGAAGTTTCTTGTGGCTGGAGTCGGACAGGAGCAcagATTGGGACGATGGTGGAGAATAAAGGAAGCTAAAAACGGACTGTATATAATTCCTCTTAAAAGACAGGCTAAAGAGCAAGAGGTTGTCCAGTAAAGCATGATTTTGGGCTTGAGTTTGGTATCAGAGaacttttaatttgttttctttacatGATGTAAAAGAGATGCTCAAATGTATATTAAGTTTATCTGTTTTATTACTCTTTACTTTCTACATAAAAGCACAAATGTGTTTGAATGTGCTTTCCTCATCTCTTAAACTCATAAAATTACGGATTAGTAATCCTTATGCCAAATGAAGacttcaggtgttttttttt
>TCONS_00008145
GTGTTTGTGACCATGTGAGTGCCAGCAGAGAGCACTAAATAAACTCAAACATCCTCAAATTACTTCTAAAAATCAGTTAAGTAAAAACGCCATCATGTCGTCCTTCTTCATAAAGAAAAAACTCGTCTCTTCAGCAACGAATAAAGGAGATTTAAAACGAAAGAGTAATACAGACGACGGCAAAGGGAGATCCAAAAGGTTcagtaaacgaatgaatgaagaaatCTCGAGTGACTCAGAAAATGAAAGTGCTGATCCAGGCAGAAAACAACAAGAGAATGAAGAAGACGAGATCGAGGAGACGGCGCAGGAGAAGAAGCTCCGCCTGGCCAAACTCTACCTGGATCAGCTGAGAGAGGAAGAGGACAAGAAAGCAGAGGAAGAGTCGTTTGAAGCGGATCTCATTGCTGGAAGACTGCAGGAGGATGTGCTGGAGCAGAAAGGCAAACTGCAAAGACTGATCGCCAAAGAACTCAAAGCTCCAGATCCAGCAGAGATCAGGCTATTGAGAGGACACAAACTACCCGTCACATGTCTCGTCATCACGCCAGATGAGAAACACATCTTCTCTGCCAGTAAAGACTGCTCCATCATCAAATGGGACGTGGAGAGCGGTAAAAAGGTGCAGAAGATCGCAGGAGGACGGAAGGGAACTGAAGATTGTCACACTGCTCACATCCTGTGCATGGCCATTTCATCTGATGGAAAATACCTGGCTAGCGGGGATATGAATAAACACATCATGATCTGGGATCCAGAGACATGTAAACATCTATTCAAGTTTACAGGACACAGAGGTGCCATATCGGGTTTGGCTTTTAGACGAGGGACTCATACTCTCTACAGTGCGTCACATGACCGCTCCATTAAAGTGTGGAGTGTGGATGAAAACGCCTATGTAGAAACTCTGTTTGGGCATCAGGATGCTATTACCGGTCTGGACTGTTTGAGCAGAGAGAGGTGTGTGACCACTGGAGGTCGAGACCGGACGGTCAGAGTCTGGAAGATAGCAGAGGAATCACAGCTCGTCTTTCATGGACATGAAGGCTCCATTGACTGTGTTCAGCTTATTAATGAAGAACACATGGTCACAGGTGGAGATGATGGCGCTGTGTCCATCTGGACGGTGAATAAGAAGAAGCCGCTGAGCTCAGTCAAGCAGGCTCATGGTGTGCGTGGCTCTGCAGGTCTGGAGCAGCCCTATTGGGTGTCATCAGTGGCGGCGCTGCACAACTCCGACACAGTGGCATCAGGCTCCCATAATTCCTCAGTGCAGCTGTGGAAGTGCGGACAGGGATTCAGAGGTCTGGAGCTGCTCTTCAGTGTACCAGTGaaCGGGTTTGTGAACAGTTTGAAGTTCTCGAACTCGGGGAAGTTTCTTGTGGCTGGAGTCGGACAGGAGCAcagATTGGGACGATGGTGGAGAATAAAGGAAGCTAAAAACGGACTGTATATAATTCCTCTTAAAAGACAGGCTAAAGAGCAAGAGGTTGTCCAGTAAAGCATGATTTTGGGCTTGAGTTTGGTATCAGAGaacttttaatttgttttctttacatGATGTAAAAGAGATGCTCAAATGTATATTAAGTTTATCTGTTTTATTACTCTTTACTTTCTACATAAAAGCACAAATGTGTTTGAA

Function

symbol description
rrp9 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060427-1 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

Ensembl:

ensembl_id ENSDARG00000041991

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008144 False 1753 mRNA 0.46 15 36215698 36230163
TCONS_00008145 True 1645 mRNA 0.46 15 36215780 36230146

Neighbor

gene id symbol gene type direction distance location
XLOC_004262 brk1 coding downstream 58727 36041617 ~ 36156971 (-)
XLOC_004261 setmar coding downstream 175149 36037076 ~ 36040549 (-)
XLOC_004260 itpr1b coding downstream 195693 35777329 ~ 36020005 (-)
XLOC_004259 bhlhe40 coding downstream 452375 35759652 ~ 35763323 (-)
XLOC_004258 arl8bb coding downstream 459230 35744918 ~ 35756468 (-)
XLOC_004264 NA coding upstream 11896 36242059 ~ 36246756 (-)
XLOC_004265 nfya coding upstream 24121 36254284 ~ 36279664 (-)
XLOC_004266 sort1a coding upstream 50360 36280523 ~ 36341189 (-)
XLOC_004267 psma5 coding upstream 112834 36342997 ~ 36350993 (-)
XLOC_004268 zbtb40 coding upstream 192070 36422233 ~ 36475124 (-)
XLOC_004063 CR854846.1 misc downstream 20088020 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23524007 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 23593931 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 23624402 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23702436 12512966 ~ 12513262 (-)
XLOC_004257 NA non-coding downstream 474254 35578730 ~ 35741444 (-)
XLOC_004255 NA non-coding downstream 774281 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 non-coding downstream 990559 35225022 ~ 35225139 (-)
XLOC_004249 NA non-coding downstream 1638592 34550847 ~ 34577106 (-)
XLOC_004247 BX548160.2 non-coding downstream 1749185 34466395 ~ 34466513 (-)
XLOC_004269 NA non-coding upstream 254229 36484392 ~ 36687161 (-)
XLOC_004270 NA non-coding upstream 338761 36568924 ~ 36569266 (-)
XLOC_004271 CR457444.8 non-coding upstream 390554 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 779998 37010161 ~ 37015507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08953503_08960561 RRP9 coding CI01000306 null 8953040 ~ 8960782 (-)