XLOC_004261 (setmar)


Basic Information

Item Value
gene id XLOC_004261
gene name setmar
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36037076 ~ 36040549 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008138
TTTCAAGCTTGTGCCCATCGATATTGTAAACAATCCGCAAGTAAATAATGTTCTCTCCCGCAAAATAATCATACATAAATTGACATAAAGACACAATGCGATCCTACAGCCAGGATTTGAGCGGCGGACTCGAGAATGTTCCTGTTTTGATCGAAAACAGTGTCCCTAAAGAGGCTCTCTCCTATTTTCAGTATGTGCCAGAGAATGTACAAGGACCCGGCTGTGACCTTGACCCGAATGCGGTGACTCTCCCTGGCTGCTCGTGTCGCGTCCAGTCCTGCTTCCCCGAAAGCTGCCCCTGCCTGAGATTTGGCCAGACGTACGACAGCAGAGCCTGTCTGAACCAACATCCACAGGAcgccacatacagcaggccagtATTCGAGTGCAATGCTCTCTGCTCCTGCGGCGAGTCCTGCCAAACCCGTGTGGTCCAAAACGGGGTGTGTGTCCGTCTGGGTGTTTTCAGCACCGCCGACAGAGGGTTGGGGGTGGAGGCTCTAGAGCGCCTTCCTTGTGGACGATTTGTATGTGAATATGCTGGGGAAGTCATTGGGATTGATGAAGCCCGTCGCCGTCAGCTTTCTCAGACTCCTCTTCATATGAATTATATTATCGCGGTGCAGGAGCATAGAGGGTTGGACAGGGTCACCCAAACTTTTGTGGACCCTGTAAATTTAGGCAATGTTGGGAGGTTCATCAATCACTCGTGCCAGCCAAATCTGATCATGCTGCCCGTCCGGGTGCATTCTGTGCTGCCCAGACTCGCTCTGTTCGCAAATCGGGATATTGAATGCTATGAAGAGCTGACTTTTGACTATTCAGGTGGACAAAACAGCAGTGCAGAAACAGCCAAATTGGATGAAAAGACTCACGTTGGAGCTGATGGTGAGGAAATACCTCAGAAGAAAGTCTGTCGTTGTGGGGCATCGAATTGTTCGGGATTTTTGCCATTGGATATGTCAATTCTTCATTAAAAAGTGTTTAGTTGTAAGTCAA

Function

symbol description
setmar Predicted to enable histone-lysine N-methyltransferase activity and zinc ion binding activity. Predicted to act upstream of or within histone lysine methylation. Predicted to be located in nucleus. Orthologous to human SETMAR (SET domain and mariner transposase fusion gene).

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
ko00310 Lysine degradation
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080204-61 Predicted to enable histone-lysine N-methyltransferase activity and zinc ion binding activity. Predicted to act upstream of or within histone lysine methylation. Predicted to be located in nucleus. Orthologous to human SETMAR (SET domain and mariner transposase fusion gene).

Ensembl:

ensembl_id ENSDARG00000074836

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008138 True 999 mRNA 0.49 2 36037076 36040549

Neighbor

gene id symbol gene type direction distance location
XLOC_004260 itpr1b coding downstream 17071 35777329 ~ 36020005 (-)
XLOC_004259 bhlhe40 coding downstream 273753 35759652 ~ 35763323 (-)
XLOC_004258 arl8bb coding downstream 280608 35744918 ~ 35756468 (-)
XLOC_004257 NA coding downstream 295632 35578730 ~ 35741444 (-)
XLOC_004256 sema3fb coding downstream 461246 35447417 ~ 35575830 (-)
XLOC_004262 brk1 coding upstream 1068 36041617 ~ 36156971 (-)
XLOC_004263 rrp9 coding upstream 175149 36215698 ~ 36230163 (-)
XLOC_004264 NA coding upstream 201510 36242059 ~ 36246756 (-)
XLOC_004265 nfya coding upstream 213735 36254284 ~ 36279664 (-)
XLOC_004266 sort1a coding upstream 239974 36280523 ~ 36341189 (-)
XLOC_004063 CR854846.1 misc downstream 19909398 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 23345385 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 23415309 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 23445780 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 23523814 12512966 ~ 12513262 (-)
XLOC_004255 NA non-coding downstream 595659 35438013 ~ 35441417 (-)
XLOC_004254 BX293991.1 non-coding downstream 811937 35225022 ~ 35225139 (-)
XLOC_004249 NA non-coding downstream 1459970 34550847 ~ 34577106 (-)
XLOC_004247 BX548160.2 non-coding downstream 1570563 34466395 ~ 34466513 (-)
XLOC_004269 NA non-coding upstream 443843 36484392 ~ 36687161 (-)
XLOC_004270 NA non-coding upstream 528375 36568924 ~ 36569266 (-)
XLOC_004271 CR457444.8 non-coding upstream 580168 36620717 ~ 36627322 (-)
XLOC_004274 BX248521.2 non-coding upstream 969612 37010161 ~ 37015507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location