RNA id: TCONS_00008140


Basic Information

Item Value
RNA id TCONS_00008140
length 1414
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_004262
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36041617 ~ 36156971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCGGAAATTGGACATGCACTGTCTCTAAAGTGATAGAGTAGTAAAATCAGAAGTAAAGTTACTTCTGGGATACTTCGAGATCATTTTGAGGCCAGATTTGGACAGGCCACAAACTTTAAACAGCGAAGATAACAAGTGGTGTGTGAGTGTGACTGGTTGTGTTTTCCGCCTGTTGCGAGGGCTGGAAGAGTGTGTTCGCACCTGTCCGAATCCAGCTCCAGCTCCTCGAAGGAAGAGACGCTGGAGGTGTCGCTTCTCTCCACACGATCGAAGTCCCAGTATTGCTGTCTGTCCGGGTGCGAGTGTGTCCGCGTGCTGGACGGGGCAGGTGAAGCGTCCTGCTGGCTCACAGAAGAACTGCGCTCGCTGTTGGAATCAGCACCTGGGTCGCTGCTTTTTCTCCTATCGCAAACAGCGGCggctaatgctaatgctaactAGCTCACGATGGCCGGACAGGAGGATCCAGTGCAAAGGGAGATTCACCAAGATTGGGCAAATCGAGAATACATCGAAGTGATCACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCTCGTTTAGCCACTTTGAATGAGAAGCTCACTGCTTTGGAGAGGAGGATCGAGTACATCGAAGCCAGAGTCACAAAAGGGGAAACCCTGACTTAGGCACATTCCTGGCATCGATGCTGAGGTCAAGATAATGGCTACGAACACGCACCTCCTGTCTtcatcatttactttaattagtCAAACAAAATTTCCATTCGTTGGCTGTTTCAGATCAGTTCATTTTTGTATGGGACCATTGTGATGCTGTAAACAGATATTTGCTTTCCTCATTTCATGCCTGATTGTGGCTGAAGTTATACTGTATCTGGTCCTTTAATTTTATTGACCTTTTTTTGATCTGTCAGGCAACTTGTTACTGTCTCTGTGGTGCTTGCTTTCGCAAACATCCCAGTGTTGTATGTTGTTTGGGTTTGACCTGCTAGTGAACTTACTTTTGACGTACCATGCAATATATATATCAACAGTCTTGCAATTGCAGACTGGAGTTACCATGGATAAACATTATGCCttgctttaattttaattattgataGCTAATATTTTGTTtgatcccccccccccctttttctTTGCGTTTTTACCAGGGTCTAAACTGTTATTGTTTAATtacaaaggtgtgtgtgtgtgtgtttaaaatacaCTGCTTCCTGCTGTACATTTGTCATGCAACAAACATCTGCACATGAGAAATGCCAGTCAGGTGGATGGAAAGCACTAAAGTGCCAATCAGACTGTTTTAAAGTGTTTAGTGCTTCTCCAATTATACAATTTTATGTCGTAGTGTCTGTTATAATGTTTTTGTGgttgaacattaaataaaaaagttaaaggaT

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0048870 cell motility biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0031209 SCAR complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-77 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

Ensembl:

ensembl_id ENSDART00000124935

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008124 lncRNA downstream 300825 35725245 ~ 35741444 (-) False XLOC_004257
TCONS_00008123 lncRNA downstream 300825 35725245 ~ 35741444 (-) True XLOC_004257
TCONS_00008837 lncRNA downstream 300828 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008484 lncRNA downstream 300829 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008839 lncRNA upstream 85124 36242059 ~ 36246756 (-) True XLOC_004264
TCONS_00008152 lncRNA upstream 133873 36290808 ~ 36291682 (-) True XLOC_004266
TCONS_00008841 lncRNA upstream 327457 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008840 lncRNA upstream 327457 36484392 ~ 36687156 (-) False XLOC_004269
TCONS_00008161 lncRNA upstream 327457 36484392 ~ 36687161 (-) False XLOC_004269
TCONS_00008138 mRNA downstream 1720 36037076 ~ 36040549 (-) True XLOC_004261
TCONS_00008134 mRNA downstream 32345 35779782 ~ 36009924 (-) False XLOC_004260
TCONS_00008144 mRNA upstream 58763 36215698 ~ 36230163 (-) False XLOC_004263
TCONS_00008145 mRNA upstream 58845 36215780 ~ 36230146 (-) True XLOC_004263
TCONS_00008146 mRNA upstream 97349 36254284 ~ 36279664 (-) False XLOC_004265
TCONS_00008147 mRNA upstream 98129 36255064 ~ 36263886 (-) False XLOC_004265
TCONS_00008148 mRNA upstream 101603 36258538 ~ 36279620 (-) False XLOC_004265
TCONS_00008119 other downstream 817130 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 1575756 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1686607 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 2075997 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2670902 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1142436 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 2018136 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 2791052 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 2932940 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 4025746 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU500827 True 695 lncRNA 0.39 1 CI01000306 8864067 ~ 8864761 (-)
rainbow trout (Oncorhynchus mykiss) TU500827 True 318 lncRNA 0.53 2 NC_048569.1 77828733 ~ 77830151 (+)
eurasian perch (Perca fluviatilis) TU260060 False 860 lncRNA 0.51 6 NC_053130.1 2504719 ~ 2508555 (-)
tiger barb (Puntius tetrazona) TU118475 False 990 lncRNA 0.39 3 NC_056709.1 8877101 ~ 8878988 (+)
mexican tetra (Astyanax mexicanus) TU118475 True 215 lncRNA 0.27 1 NC_035906.1 2085636 ~ 2085850 (-)
mexican tetra (Astyanax mexicanus) TU260060 True 2147 lncRNA 0.40 5 NC_035918.1 21099347 ~ 21108506 (+)