RNA id: TCONS_00008118


Basic Information

Item Value
RNA id TCONS_00008118
length 2096
RNA type mRNA
GC content 0.42
exon number 16
gene id XLOC_004253
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35162684 ~ 35171768 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGAGTCATTAGGTTTGAACTCGGCGCGCCGCTTAAGTCAAGTCGGAAGCTCAAAAAGAACTACAGACAaacaatataaacacaattatGGAGTTTAATTAAGAAAAATTCCATTCACAAGACATTTCATGCGTTTCAGTATCACCTGGATCAACAATGCCCATTCGAGCATACTGCACAATCTGCTCAGATTTCTTCGACCATTCTAAAGATGTGGCTGCAATTCACTGTGGCCATACCTTTCACTATAGCTGTCTTCTCCAGTGGTTTCAGTCAGCCCCAAACAAAACTTGTCCACAATGCAGAAAACAGgTCAGCACACGGCACATAATTAACAAGCTGTTCTTTGACATCGCCCCAGAGGATGATGGGGCGCCAGTGGATCCTGAAAGTTTACAGAATGAGCTCGATCGCATGAAAGCAGTGCTGTCTGAAAAAGAGAAAGAATGGAGGGAAAAGCAGAAGACAGTTGACACTTTAAAAGACACAATTGAGAAGCAGAAGAAGGATCTGGATAAAGTCCGGAAAGAAATTGGTGATAAAGAGATGCTGTGTTCCGTTCTCCGGAAACAGATGAATTTCTTGGAGAGCCAGAAAAATGAAGGACAGGCAGCAAAGGAGGAAGCCAAGCGGCTCCGAGTCAAAATGAAAACCTACGAGAGTTTGGATGTTGTCCTtcaaggccagaggtcagaggtggAGGCCATGATCACTGATATGGGTGTTGGTCAATCTGCTGTTGAACAGTTGTCTATATACTGCATCTCACTTAAAAAggaGTACGACAATCTGAAAGGAAGCCTCAAATCATCAAATGAGATGTGTGAGAAGCTAAAAAGGGAAATGATCTCTTCTAACAGCaagTTGCAGAAAGCCACTTCAGAGACAAACAGGACAAAGGAGGACATGAAGGCACTTCAGAAAGATCTGTCCAGCGCAGACAAAGAGATCACGAGTTTGAAGAAGAAGGTGGAGATTCTTCAGCGAACGTTAAGCACTCCAACTCGCACTAACGAGGCTATCAGTAGATTAGTGTTTGAAAGCCCTGCACCTCTGGAGCTGAAGCCTCCTGGTCATGGTCACATGACAGACTCTCAGGAAATTGACCTCAACCTGACGTTTGACATTAACACCCCTGAACATGTGGAGAAGAAACCCGTTCAGGTGCCCAAGAAGATGCGTCTGGATCCTTCAGTATCCTCTTCaacacaaaacacagaaaatacACAAGGCCGAAATAACGGTCGTGTTAAAGATGATGATGTCATGATGGGATCCTTGTTTAGAAACTCGCTGCTCTTTAGAAAGAATGCATTTGGAAGCATGCTGGACCCCTGCAAATCTGGCACTGTAAGATCCGGCTATGATGGGCTCGGAGGAAGAGCCAAATTCATCCAACCCTCTCCTCTTTCTGAGATTCGACCTCTTGTCTTAAAGTCTAAGAGGAAGAAGGTCTCCAGGCCTGTTACAAGCAAACCCACCTCCAGCCTGACTACTCTGGACGGGTTCTTGGAATAAAACATCACCCTTTTGAGGCCCAAGAGAGAACATTGATTTCCCATGATGCCACCCAGAAATGCATTACGGGAAATGAACATTCACAGATGCTTTAATAAGGAAAGTGGTCTTCGTGAATGCTTGTGGAGCTGCTGATAAATGCAAAACACTTTTTAGCGCTAGCTTTGGTAAATTTTCAATAGAGACTGAAAATGGAGTCTAATGCGAgactgtgtttgtggaaaaatcTGTGCGTTTATCTTGATGAGTTTTTCAGCTTGGACAGATTGAATGGTGCCATCGGGTAGTGGATGCCTTATAATATGCTGAATTTTACTAGTCGAAAGAGTTATTTATTTGACTTGCTTGCCATCAAAATTAAACAGGGCTGCATTTCTGTCTTTGTATTTTCAAGTGTCTTTAGGTTAGAATTTATGtctatcttttgtttgttttctgtttcgTTTCTTCTCTAAATAGTTTGATATATCaaatattgtgtttgtttttaaaaatttctttgTTTGAGATTAGTTTTTTCTTGTGTCTGTACAGATGATTATTATGTGAAACaataaactatagtttttattagTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040801-30 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein).

Ensembl:

ensembl_id ENSDART00000017393

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008834 lncRNA downstream 585824 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008833 lncRNA downstream 804136 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 907605 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 937027 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 937268 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008835 lncRNA upstream 266851 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 407568 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 408695 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 493389 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008837 lncRNA upstream 493389 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008116 mRNA downstream 378887 34779610 ~ 34783938 (-) False XLOC_004252
TCONS_00008115 mRNA downstream 378887 34779610 ~ 34783938 (-) True XLOC_004252
TCONS_00008114 mRNA downstream 442195 34650127 ~ 34720630 (-) True XLOC_004251
TCONS_00008113 mRNA downstream 442196 34633392 ~ 34720629 (-) False XLOC_004251
TCONS_00008112 mRNA downstream 534036 34580085 ~ 34628789 (-) True XLOC_004250
TCONS_00008121 mRNA upstream 276255 35447417 ~ 35575830 (-) False XLOC_004256
TCONS_00008120 mRNA upstream 276255 35447417 ~ 35575830 (-) False XLOC_004256
TCONS_00008122 mRNA upstream 277389 35448551 ~ 35575791 (-) True XLOC_004256
TCONS_00008125 mRNA upstream 573756 35744918 ~ 35756468 (-) True XLOC_004258
TCONS_00008126 mRNA upstream 588490 35759652 ~ 35763323 (-) True XLOC_004259
TCONS_00008105 other downstream 696312 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 807163 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 1196553 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 1791458 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 2425232 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008119 other upstream 53860 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2128209 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3003909 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 3776825 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 3918713 39089875 ~ 39089991 (-) True XLOC_004308

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_08349295_08353547.mRNA True 1486 mRNA 0.45 14 CI01000306 8349156 ~ 8353547 (-)