XLOC_004252 (chchd4a)


Basic Information

Item Value
gene id XLOC_004252
gene name chchd4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34779610 ~ 34783938 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008116
GTGGTTACTGTACCGCCTCCATGCTGGAGTTTTTGTAACAGGCGTGTGGACCGATAGCTGAGCCGGTGTTTGAGTTTTATTGATCGGATAAACGGCGATCAGACGGATCTGTAAGCAGGCATGTCGTACTGCAAGCAGGAAGGTAAAGATCGCATCATATTTGTCACCAAGGAAGATCATGAAGCTCCCAGTAATGCCGAACTTGTTGAAGATGACCCTAATGATCCATATGAGGATCACGCAAAGAGGAGATAAAGGGCTCCGATTGTGTGGAAAACTTCCGGGGTATGCAGGAGTGTATGCAGAAATACCCTGAGCTTTACCCTCAGGAAGACGACAACGACAGTGCCCCCTCTGGTGAAGCAAATACTGCACCCACTGACTCTCTCCCAGCATCCTCTACTGATTCCACAGCAGCAGCAGCCACAGAAAACCCAGCGACTAGCTAATGTTATCCTCACTTCACCCCCTCACAGCAAAGACAGCTCCACTTTTGACTATGAAGAGATCATATGTAACAATGCCCCAGAATCTGTGAAGCAAACAGATGCAGGAAGCTCTTAAACGTCAGGTTTTGTGATTAAAATGTGACATTAACGTGCACTTGAGAGACCTAAAAATGAGGTTCGGGATCTAAATGAGTGGCAGGTGAGTCTGCGCTTGGCTCTGTGAAACATTAGACTTCATTTGAATCATCCTGGTTTGTATCTTCTGGTTATTTGCTCCACAGATTGTTTGACTTGTGTACTGCTGCTACTACAGGCCACTTTGTGTTTGAGCAGTTTTTAGAAGAAAGGCTGAAATAGCGCATCTATATACATTTCCtgtaattattttgttgttggaGTATGATTAAACACTTTTATGATGAA
>TCONS_00008115
GTGGTTACTGTACCGCCTCCATGCTGGAGTTTTTGTAACAGGCGTGTGGACCGATAGCTGAGCCGGTGTTTGAGTTTTATTGATCGGATAAACGGCGATCAGACGGATCTGTAAGCAGGCATGTCGTACTGCAAGCAGGAAGGTAAAGATCGCATCATATTTGTCACCAAGGAAGATCATGAAGCTCCCAGTAATGCCGAACTTGTTGAAGATGACCCTAATGATCCATATGAGGATCACGGTCTTATTCTACCTAATGGCGACATAAACTGGAACTGCCCGTGTTTGGGCGGCATGGCCAGTGGCCCTTGTGGACAGCAGTTCAAGGATGCGTTTTCATGTTTCCACTATAGCAAAGAGGAGATAAAGGGCTCCGATTGTGTGGAAAACTTCCGGGGTATGCAGGAGTGTATGCAGAAATACCCTGAGCTTTACCCTCAGGAAGACGACAACGACAGTGCCCCCTCTGGTGAAGCAAATACTGCACCCACTGACTCTCTCCCAGCATCCTCTACTGATTCCACAGCAGCAGCAGCCACAGAAAACCCAGCGACTAGCTAATGTTATCCTCACTTCACCCCCTCACAGCAAAGACAGCTCCACTTTTGACTATGAAGAGATCATATGTAACAATGCCCCAGAATCTGTGAAGCAAACAGATGCAGGAAGCTCTTAAACGTCAGGTTTTGTGATTAAAATGTGACATTAACGTGCACTTGAGAGACCTAAAAATGAGGTTCGGGATCTAAATGAGTGGCAGGTGAGTCTGCGCTTGGCTCTGTGAAACATTAGACTTCATTTGAATCATCCTGGTTTGTATCTTCTGGTTATTTGCTCCACAGATTGTTTGACTTGTGTACTGCTGCTACTACAGGCCACTTTGTGTTTGAGCAGTTTTTAGAAGAAAGGCTGAAATAGCGCATCTATATACATTTCCtgtaattattttgttgttggaGTATGATTAAACACTTTTATGATGAA

Function

symbol description
chchd4a Predicted to enable protein-disulfide reductase activity. Predicted to be involved in 'de novo' posttranslational protein folding; mitochondrion organization; and protein maturation by protein folding. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Is expressed in brain; eye; head; liver; and somite. Orthologous to human CHCHD4 (coiled-coil-helix-coiled-coil-helix domain containing 4).

GO:

id name namespace
GO:0033108 mitochondrial respiratory chain complex assembly biological_process
GO:0022417 protein maturation by protein folding biological_process
GO:0015031 protein transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051084 'de novo' posttranslational protein folding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-46 Predicted to enable protein-disulfide reductase activity. Predicted to be involved in 'de novo' posttranslational protein folding; mitochondrion organization; and protein maturation by protein folding. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Is expressed in brain; eye; head; liver; and somite. Orthologous to human CHCHD4 (coiled-coil-helix-coiled-coil-helix domain containing 4).

Ensembl:

ensembl_id ENSDARG00000033376

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008116 False 872 mRNA 0.45 3 34779610 34783938
TCONS_00008115 True 984 mRNA 0.45 3 34779610 34783938

Neighbor

gene id symbol gene type direction distance location
XLOC_004251 dnah1 coding downstream 58980 34633392 ~ 34720630 (-)
XLOC_004250 mapkapk3 coding downstream 150821 34580085 ~ 34628789 (-)
XLOC_004249 NA coding downstream 202504 34550847 ~ 34577106 (-)
XLOC_004248 pik3ca coding downstream 257361 34488869 ~ 34522249 (-)
XLOC_004246 xxylt1 coding downstream 298788 34401460 ~ 34480822 (-)
XLOC_004253 traip coding upstream 378746 35162684 ~ 35171768 (-)
XLOC_004254 BX293991.1 coding upstream 441084 35225022 ~ 35225139 (-)
XLOC_004255 NA coding upstream 654075 35438013 ~ 35441417 (-)
XLOC_004256 sema3fb coding upstream 663479 35447417 ~ 35575830 (-)
XLOC_004257 NA coding upstream 794792 35578730 ~ 35741444 (-)
XLOC_004063 CR854846.1 misc downstream 18651932 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 22087919 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 22157843 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 22188314 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 22266348 12512966 ~ 12513262 (-)
XLOC_004247 BX548160.2 non-coding downstream 313097 34466395 ~ 34466513 (-)
XLOC_004244 NA non-coding downstream 420921 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding downstream 423948 34355544 ~ 34355662 (-)
XLOC_004243 FO681390.1 non-coding downstream 524390 34249456 ~ 34255220 (-)
XLOC_004264 NA non-coding upstream 1458121 36242059 ~ 36246756 (-)
XLOC_004269 NA non-coding upstream 1700454 36484392 ~ 36687161 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08143309_08144833 CHCHD4, CHCHD4A coding CI01000306 null 8143139 ~ 8146400 (-)