XLOC_004253 (traip)


Basic Information

Item Value
gene id XLOC_004253
gene name traip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35162684 ~ 35171768 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008117
cccatttaaaactataaatCGAAGTGTATTTTTATGATAATCCTtcatatttgtaaaaaattaacGCATATAGACGTTTTGTTGACATGTTCTCTTCATTTTGTGAATAAATCCCATGACCGACTGACAAACGCATTAGCCAAAGAGCTAACGTTAAACCTTTAAAACTGTTGATGTCACTACTAAATATCTTCTTCTGCGCCAGCTTTAATTTAACCACGTCTAACAGATGTTGTTTGGATAGTTTGGACTCTTAATAAGACATTTTCTAGTTACTGTACCTTAAAAGCTCTTCATCCAAATCACTGAATGTTGACTTATCTTAGGTCAAAAACCAACTCAGACTGTCACAGGCGGCATCACGCAGCGGAAATCGGAACTCTGGGAAGTGTAGTTTTTGAGTCGATAACGTTAGTAGTTTGTTTGAGCCGGTTTGAGCGTGTTACCTCCACTGGATGTTACTTTGCTCTATATGTCGCTTGATCTGAATGAATTGAACGTGTACATTTTACACACCTCGATTAGCTTCTTCTTTAACAATAATAAGAGAATAACGTGTTGTATTTAACTCCTCACGGCGTCGTGTGTTGATGACGTGACTAAAGAGGAGGAGTCATTAGGTTTGAACTCGGCGCGCCGCTTAAGTCAAGTCGGAAGCTCAAAAAGAACTACAGACAaacaatataaacacaattatGGAGTTTAATTAAGAAAAATTCCATTCACAAGACATTTCATGCGTTTCAGTATCACCTGGGTAAGTAAATACAGCACATGAGGATATAAACAGGTATCGCCAGATCGCCACACGATCAGTCAACACGAAACGTGCCATAAACAGAGATGTCTCTTTCAGATCAACAATGCCCATTCGAGCATACTGCACAATCTGCTCAGATTTCTTCGACCATTCTAAAGATGTGGCTGCAATTCACTGTGGCCATACCTTTCACTATAGCTGTCTTCTCCAGTGGTTTCAGTCAGCCCCAAACAAAACTTGTCCACAATGCAGAAAACAGgTCAGCACACGGCACATAATTAACAAGCTGTTCTTTGACATCGCCCCAGAGGATGATGGGGCGCCAGTGGATCCTGAAAGTTTACAGAATGAGCTCGATCGCATGAAAGCAGTGCTGTCTGAAAAAGAGAAAGAATGGAGGGAAAAGCAGAAGACAGTTGACACTTTAAAAGACACAATTGAGAAGCAGAAGAAGGATCTGGATAAAGTCCGGAAAGAAATTGGTGATAAAGAGATGCTGTGTTCCGTTCTCCGGAAACAGATGAATTTCTTGGAGAGCCAGAAAAATGAAGGACAGGCAGCAAAGGAGGAAGCCAAGCGGCTCCGAGTCAAAATGAAAACCTACGAGAGTTTGGATGTTGTCCTtcaaggccagaggtcagaggtggAGGCCATGATCACTGATATGGGTGTTGGTCAATCTGCTGTTGAACAGTTGTCTATATACTGCATCTCACTTAAAAAggaGTACGACAATCTGAAAGGAAGCCTCAAATCATCAAATGAGATGTGTGAGAAGCTAAAAAGGGAAATGATCTCTTCTAACAGCaagTTGCAGAAAGCCACTTCAGAGACAAACAGGACAAAGGAGGACATGAAGGCACTTCAGAAAGATCTGTCCAGCGCAGACAAAGAGATCACGAGTTTGAAGAAGAAGGTGGAGATTCTTCAGCGAACGTTAAGCACTCCAACTCGCACTAACGAGGCTATCAGTAGATTAGTGTTTGAAAGCCCTGCACCTCTGGAGCTGAAGCCTCCTGGTCATGGTCACATGACAGACTCTCAGGAAATTGACCTCAACCTGACGTTTGACATTAACACCCCTGAACATGTGGAGAAGAAACCCGTTCAGGTGCCCAAGAAGATGCGTCTGGATCCTTCAGTATCCTCTTCaacacaaaacacagaaaatacACAAGGCCGAAATAACGGTCGTGTTAAAGATGATGATGTCATGATGGGATCCTTGTTTAGAAACTCGCTGCTCTTTAGAAAGAATGCATTTGGAAGCATGCTGGACCCCTGCAAATCTGGCACTGTAAGATCCGGCTATGATGGGCTCGGAGGAAGAGCCAAATTCATCCAACCCTCTCCTCTTTCTGAGATTCGACCTCTTGTCTTAAAGTCTAAGAGGAAGAAGGTCTCCAGGCCTGTTACAAGCAAACCCACCTCCAGCCTGACTACTCTGGACGGGTTCTTGGAATAAAACATCACCCTTTTGAGGCCCAAGAGAGAACATTGATTTCCCATGATGCCACCCAGAAATGCATTACGGGAAATGAACATTCACAGATGCTTTAATAAGGAAAGTGGTCTTCGTGAATGCTTGTGGAGCTGCTGATAAATGCAAAACACTTTTTAGCGCTAGCTTTGGTAAATTTTCAATAGAGACTGAAAATGGAGTCTAATGCGAgactgtgtttgtggaaaaatcTGTGCGTTTATCTTGATGAGTTTTTCAGCTTGGACAGATTGAATGGTGCCATCGGGTAGTGGATGCCTTATAATATGCTGAATTTTACTAGTCGAAAGAGTTATTTATTTGACTTGCTTGCCATCAAAATTAAACAGGGCTGCATTTCTGTCTTTGTATTTTCAAGTGTCTTTAGGTTAGAATTTATGtctatcttttgtttgttttctgtttcgTTTCTTCTCTAAATAGTTTGATATATCaaatattgtgtttgtttttaaaaatttctttgTTTGAGATTAGTTTTTTCTTGTGTCTGTACAGATGATTATTATGTGAAACaataaactatagtttttattagTATTTCTTTGCCATGGTTACTTTTAAGATTGCATTAGTCACTTGTAAATAGATCAACAACAAAATAGTGTACAAAGCCAAATTATAAAAGGATTCTTCCCATATATATGCAGCAGGGGGCGCTAAAGGTTTGCGTATTTGAAT
>TCONS_00008118
GGAGGAGTCATTAGGTTTGAACTCGGCGCGCCGCTTAAGTCAAGTCGGAAGCTCAAAAAGAACTACAGACAaacaatataaacacaattatGGAGTTTAATTAAGAAAAATTCCATTCACAAGACATTTCATGCGTTTCAGTATCACCTGGATCAACAATGCCCATTCGAGCATACTGCACAATCTGCTCAGATTTCTTCGACCATTCTAAAGATGTGGCTGCAATTCACTGTGGCCATACCTTTCACTATAGCTGTCTTCTCCAGTGGTTTCAGTCAGCCCCAAACAAAACTTGTCCACAATGCAGAAAACAGgTCAGCACACGGCACATAATTAACAAGCTGTTCTTTGACATCGCCCCAGAGGATGATGGGGCGCCAGTGGATCCTGAAAGTTTACAGAATGAGCTCGATCGCATGAAAGCAGTGCTGTCTGAAAAAGAGAAAGAATGGAGGGAAAAGCAGAAGACAGTTGACACTTTAAAAGACACAATTGAGAAGCAGAAGAAGGATCTGGATAAAGTCCGGAAAGAAATTGGTGATAAAGAGATGCTGTGTTCCGTTCTCCGGAAACAGATGAATTTCTTGGAGAGCCAGAAAAATGAAGGACAGGCAGCAAAGGAGGAAGCCAAGCGGCTCCGAGTCAAAATGAAAACCTACGAGAGTTTGGATGTTGTCCTtcaaggccagaggtcagaggtggAGGCCATGATCACTGATATGGGTGTTGGTCAATCTGCTGTTGAACAGTTGTCTATATACTGCATCTCACTTAAAAAggaGTACGACAATCTGAAAGGAAGCCTCAAATCATCAAATGAGATGTGTGAGAAGCTAAAAAGGGAAATGATCTCTTCTAACAGCaagTTGCAGAAAGCCACTTCAGAGACAAACAGGACAAAGGAGGACATGAAGGCACTTCAGAAAGATCTGTCCAGCGCAGACAAAGAGATCACGAGTTTGAAGAAGAAGGTGGAGATTCTTCAGCGAACGTTAAGCACTCCAACTCGCACTAACGAGGCTATCAGTAGATTAGTGTTTGAAAGCCCTGCACCTCTGGAGCTGAAGCCTCCTGGTCATGGTCACATGACAGACTCTCAGGAAATTGACCTCAACCTGACGTTTGACATTAACACCCCTGAACATGTGGAGAAGAAACCCGTTCAGGTGCCCAAGAAGATGCGTCTGGATCCTTCAGTATCCTCTTCaacacaaaacacagaaaatacACAAGGCCGAAATAACGGTCGTGTTAAAGATGATGATGTCATGATGGGATCCTTGTTTAGAAACTCGCTGCTCTTTAGAAAGAATGCATTTGGAAGCATGCTGGACCCCTGCAAATCTGGCACTGTAAGATCCGGCTATGATGGGCTCGGAGGAAGAGCCAAATTCATCCAACCCTCTCCTCTTTCTGAGATTCGACCTCTTGTCTTAAAGTCTAAGAGGAAGAAGGTCTCCAGGCCTGTTACAAGCAAACCCACCTCCAGCCTGACTACTCTGGACGGGTTCTTGGAATAAAACATCACCCTTTTGAGGCCCAAGAGAGAACATTGATTTCCCATGATGCCACCCAGAAATGCATTACGGGAAATGAACATTCACAGATGCTTTAATAAGGAAAGTGGTCTTCGTGAATGCTTGTGGAGCTGCTGATAAATGCAAAACACTTTTTAGCGCTAGCTTTGGTAAATTTTCAATAGAGACTGAAAATGGAGTCTAATGCGAgactgtgtttgtggaaaaatcTGTGCGTTTATCTTGATGAGTTTTTCAGCTTGGACAGATTGAATGGTGCCATCGGGTAGTGGATGCCTTATAATATGCTGAATTTTACTAGTCGAAAGAGTTATTTATTTGACTTGCTTGCCATCAAAATTAAACAGGGCTGCATTTCTGTCTTTGTATTTTCAAGTGTCTTTAGGTTAGAATTTATGtctatcttttgtttgttttctgtttcgTTTCTTCTCTAAATAGTTTGATATATCaaatattgtgtttgtttttaaaaatttctttgTTTGAGATTAGTTTTTTCTTGTGTCTGTACAGATGATTATTATGTGAAACaataaactatagtttttattagTA

Function

symbol description
traip Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040801-30 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein).

Ensembl:

ensembl_id ENSDARG00000011262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008117 False 2942 mRNA 0.41 15 35162684 35171768
TCONS_00008118 True 2096 mRNA 0.42 16 35162825 35171162

Neighbor

gene id symbol gene type direction distance location
XLOC_004252 chchd4a coding downstream 378746 34779610 ~ 34783938 (-)
XLOC_004251 dnah1 coding downstream 442054 34633392 ~ 34720630 (-)
XLOC_004250 mapkapk3 coding downstream 533895 34580085 ~ 34628789 (-)
XLOC_004249 NA coding downstream 585578 34550847 ~ 34577106 (-)
XLOC_004248 pik3ca coding downstream 640435 34488869 ~ 34522249 (-)
XLOC_004254 BX293991.1 coding upstream 53254 35225022 ~ 35225139 (-)
XLOC_004255 NA coding upstream 266245 35438013 ~ 35441417 (-)
XLOC_004256 sema3fb coding upstream 275649 35447417 ~ 35575830 (-)
XLOC_004257 NA coding upstream 406962 35578730 ~ 35741444 (-)
XLOC_004258 arl8bb coding upstream 573150 35744918 ~ 35756468 (-)
XLOC_004063 CR854846.1 misc downstream 19035006 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 22470993 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 22540917 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 22571388 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 22649422 12512966 ~ 12513262 (-)
XLOC_004247 BX548160.2 non-coding downstream 696171 34466395 ~ 34466513 (-)
XLOC_004244 NA non-coding downstream 803995 34315525 ~ 34358689 (-)
XLOC_004245 BX548160.1 non-coding downstream 807022 34355544 ~ 34355662 (-)
XLOC_004243 FO681390.1 non-coding downstream 907464 34249456 ~ 34255220 (-)
XLOC_004264 NA non-coding upstream 1070291 36242059 ~ 36246756 (-)
XLOC_004269 NA non-coding upstream 1312624 36484392 ~ 36687161 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08349295_08353547 TRAIP coding CI01000306 null 8349156 ~ 8353547 (-)