RNA id: TCONS_00008834


Basic Information

Item Value
RNA id TCONS_00008834
length 4355
lncRNA type sense_over
GC content 0.36
exon number 2
gene id XLOC_004249
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34550847 ~ 34577106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTATACCTCAAGGCTCgagcatcaaaataaagcacTAACACACAAAACGCGGACAATGAGGGGTGCTAGCCGGTCCAAAATCACGCAGAATCTGGATAAGAGAGAATGTTAATGTTCACCGCACCACTGAGGATGCCCTACAGACCGTCCCGTCTCACCTCTGACCCACAGCCATCCTGCCGTCCAACTGTCCACTACACCAGAGTCTCTGATCCAGTCGCTGTAAGATAACCAGTGCTTGTGTATTGTGTGTGGTTTCTCACTCTGTTTTGAAAGAGCCATAATCCGTTTACATGGCATGAGGTCTACACAAAGCCTGGGAGATTTCATTTGCACTTAATGGGGTTTAGGTTACCTTTACAACACTAGTTCTGAAAAAATTAGGACATTTTGTAAATGCTGGTATTAATTACTGTTAAtcaggcagatttttttttaaatgtagaattaCAGGTAGCACTTTCCAATACGGTCATAAGTTACAATGAACAAGCAATGAGCAATACAGTTACTACAgtctttattcatctttgttgatgttagttaatgaaattgAAGTTATTCATTACTTGTTAACTCGCCAAAATGATTTAACTAATGTTATTAAatggctctctggaatacttaAATCTGATTGGGCAATCATGTCATTGCAAGGTATGTTGTGTTATATTATTTGAGGGATGaagtacatccaggcggttgtTGTTGCAGAATGAAGTGAAGCGAAGCACTGCTGTATATAACTGAAGGCcattattctgtgaaaacaaccaccctggatgtactttatcctaacatggctacttgccacaaaactgaCACAAATCATCGTTCTTAGccataatagtttgttaattctttaattaaaagcAAAAGTGGCAAAATCGAAAAACAGCTAATGGAGtgtacactaacctgcgcattattcaatCACAAAATGACGCCATCAGTCAAAattgcaaagagaaaagaaaactgctgatggagtatacactaacttgaGCATTATTCggtcacaagatggtgccaaacaatAAAAAGCGCAAAGCCGatagaaacgaaaacagctgatggagtatacaataacctgcacattattcaatcACAAGATGGCGTTAAACAGTCAAACGCAAAGCTgtcagaaacgaaaacagctgatggagtatacactaacctacgcattattcagtcacaagatggcaccaaacggTCAAAAACGcagagctgacagaaacaaaaacagctgatggagtatacactaacctatgcATTATTcggtcacaagatggcgccaaacaataaaaagagcaaagctgatagaaacgaaaacagctgatagtatacactaacctgcacattattcaatcACAAGATGGTGTTAAACAGTCAAACGTAAagctaacaaacaaaaacagctgatggagtatacactaacctatgcattattcagtcacaagatggtgccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacaataacctgcacattattcagtcacaagatggcgttAAACAGTCAAACGCAAAGCTgtcagaaacgaaaacagctgatggagtatacactaacctacgcattattcagtcacaagatggcaccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacactaacctgcacattattcagtcacaagatggcgccaaacggtcaaaaacgcaaagctgacagaaacaaaaaacagctgatggagtatacttCAACCTGTACATTATTcaatcacaagatggcgccaaacagtcaaaaatgcaaagctaacacggtgtttcctctaggattttttccagctgtggcggcaggtcttttttacacagatctaccaactacctgtggcgttatttcaataacatatgtcatgagcgcagtattaaaagtcgagatcgcatttatgtaattatgtaaacgctgctgaagtgcgatttagtgtgtttatgtaacaagtaaaTCTCCAACATAagttagatttgctaggaatatttatgaatgtctccaatagacctacagagcggtattaatgcgtTCTGAGGTGAAGTgaagcacgtaaccttaaagggttaaacaaataacgcacagctcTACTATGgtaacagaaaagtttgcgctgttataattcacttaccttttaatacgttttggtgcaattatcacccgctattaaaaaaaacacacgacttaatgttttgaatgaaaagctgtaacGTAGacgtggcgggatcaattttggcatTGCGTCCTGCCATGGAAGAATAAATTTAGCGGAAACCAtgtaacaaaaagtaaaatagcTGATGGGGTAAACACTAACCGGCACATTATTTGGTGGCGCCAagcagtcaaaaacgcaaagctgacagaaacaaaattaCGATATTAAACCTGCTCTGCAATCATTCAGAAGAGAGCATTGAAATATTGTACAGACCTAAGTTAACTACGTTTATCTGAGTCTCTCTGATGCAATAAAATATTTCTTTGtacttttgtaaattaaataaaatttgatttgcattttagAAAATGTCACAACTTTTTCAGAACTTGGCTTGTAATACTATGGCtcttatatgtatatttaatatacatatatttacagaaatgtctgtTATACCTATATGGGAACTGCAGGTGTGTTCGTTTGCTGCTCCTCCAATATTTGTGCTTCTGTTTTGTCAAATCTGAAAGGGTTTCTCTCTGTTATTTTGAGGGATGGATGACAACATTGTTGTATCTTTGTACATAGAAGTccgagaaaaacaaaaaacactcatTGTGTCAAAGAGCTTTATTTACTTCATCTCCCGAAAACATTATTAGAGCTGTTTTTTATATGCTTGGAAAGAAATATTGACCTTTTTCACCTGACATTTAAATCAGATACTGATTATCAATTCAAGTGCTAGTTGTTTTAATCAGGCAGGTATTTTTTATATCATGTcaatttacaaaagtgattttaacTGCATGTTTCTGAGAATTCTAATAGCTCGTGAGAGGGAAATTTAAGCTGTTTGTTACATTAACAAATTTGGGAACAAGACAAAAATCTCAGTATTTGTATTGATATTAAACCTGCTCTACAGTTACTGATCATTATTAGCCATTTGCATTTGCACTCCATTTTGTTTGGAAACAAGCTAGTTTTGCAAgtcatttatcattttttaatccatttagctAATATataggtctggcaggagcacttttatcttagcttagcataaatcactgaatcagattagaccattagcatcacactcaaaacattcaaataaaagtttcaatagtttcctatttaaagcttgactcttctgttggTTACATTATATAcagaagtgtcaagctttaaatattagcaaaactcttagattttttttttatgctaatggtctaatctgattcaatgacttatgctaagctaagctaaaagtgctcctgccagatcaGGAAATcatctgaatggattcaaaaatgataaaactccACCATTTAattctaggtgacttgtaaaatcaGCCTATTTCTGTTTCTTTAAAGGTTAAAACATAGTACAGAACTGTTAACTGAGTTCATCTGAGTGTGTCCGATGTTAAATCTGTGTTTCTTTAGTCTAGCTGAACATGTTTATGTGCACTGAATTGTTGCCTCGAACCGTATCCAAAGAGTGCTGTGATGATTCCTGTACATTTGAAACAGATCTTGAATATTTAAATGAGATTTTCTGGAAAATGACTGCTTGTATTGTTATGATTTGGTGCCAGAATCACAATAAATATATAGAGATGTTTTGATGTAATAGTGCATCGTTAGTGAAGAATCACTGATTTGAATTCATCTGTGCATCCAAATACGTTTTCATGTTCACCACCACTCGTATGACATAACCGAAAGACAAAACTGTGTGTGTACATACTACAAGATCATGGAAAAGTAATATATTTGATGTCAGTTCACATGGAACTTTTATCGCACCCATTGAAAAAgattcagtgtttgtgtgtgtttgcattgaaAATTCTCCTTGAATAAACATTTTGTGGTGATTTTAAATGTTGTCGTTTTGCTTCCATGCTGAATATTGTtttacacttattatttttatgtaaacatttccaaaaataacatttaaaataaacaatattaataacaatatctaggctatctatccatctgtccgtccgtctatctatccatccatacatctatctacATTTCTGCCAATCTATTTTaaccgttcatccatccatccgttcttccatccatcc

Function

GO:

id name namespace
GO:0045786 negative regulation of cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008833 lncRNA downstream 192158 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 295627 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 325049 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 325290 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008482 lncRNA downstream 557700 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008835 lncRNA upstream 861012 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 1001729 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 1002856 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 1087550 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008837 lncRNA upstream 1087550 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008106 mRNA downstream 28598 34488869 ~ 34522249 (-) False XLOC_004248
TCONS_00008108 mRNA downstream 29505 34489410 ~ 34521342 (-) True XLOC_004248
TCONS_00008107 mRNA downstream 32485 34489410 ~ 34518362 (-) False XLOC_004248
TCONS_00008103 mRNA downstream 70025 34401460 ~ 34480822 (-) False XLOC_004246
TCONS_00008104 mRNA downstream 72622 34402416 ~ 34478225 (-) True XLOC_004246
TCONS_00008112 mRNA upstream 3084 34580085 ~ 34628789 (-) True XLOC_004250
TCONS_00008113 mRNA upstream 56391 34633392 ~ 34720629 (-) False XLOC_004251
TCONS_00008114 mRNA upstream 73126 34650127 ~ 34720630 (-) True XLOC_004251
TCONS_00008116 mRNA upstream 202609 34779610 ~ 34783938 (-) False XLOC_004252
TCONS_00008115 mRNA upstream 202609 34779610 ~ 34783938 (-) True XLOC_004252
TCONS_00008105 other downstream 84334 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 195185 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 584575 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 1179480 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1813254 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008119 other upstream 648021 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2722370 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3598070 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 4370986 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 4512874 39089875 ~ 39089991 (-) True XLOC_004308

Expression Profile

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