RNA id: TCONS_00008833


Basic Information

Item Value
RNA id TCONS_00008833
length 316
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_004244
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34315525 ~ 34358689 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcgaaccaggaaccttcttgctgtaagttttacctggtttctggaattTTCCTTTACTGGACTCAAACTCCAGTCTGCTCCGCTCTGCATCCCAAATCCCACACCGTACATGGCAAACCAGTCAACCAGacaagccatccatatggagGATCCACAAGAAGCCACAAGATCACCCTGCTTTTATTGCTTGTGTTTTAACACCACAAGAGGAGGCACATCTGACAAGAACACAACCTCGGCTGTCACTGCATACAGGTCAGGACTGGATATCTATGACTTGGATGAATATTAAAAAGACACACTATAGCCTGATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008101 lncRNA downstream 60305 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 89727 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 89968 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008482 lncRNA downstream 322378 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008832 lncRNA downstream 626576 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008834 lncRNA upstream 192158 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008835 lncRNA upstream 1079324 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 1220041 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 1221168 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 1305862 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008098 mRNA downstream 82619 34219991 ~ 34232906 (-) False XLOC_004242
TCONS_00008097 mRNA downstream 96314 34201183 ~ 34219211 (-) True XLOC_004241
TCONS_00008095 mRNA downstream 127179 34154593 ~ 34188346 (-) False XLOC_004240
TCONS_00008096 mRNA downstream 148565 34158178 ~ 34166960 (-) True XLOC_004240
TCONS_00008094 mRNA downstream 164038 34151177 ~ 34151487 (-) True XLOC_004239
TCONS_00008103 mRNA upstream 42771 34401460 ~ 34480822 (-) False XLOC_004246
TCONS_00008104 mRNA upstream 43727 34402416 ~ 34478225 (-) True XLOC_004246
TCONS_00008106 mRNA upstream 130180 34488869 ~ 34522249 (-) False XLOC_004248
TCONS_00008107 mRNA upstream 130721 34489410 ~ 34518362 (-) False XLOC_004248
TCONS_00008108 mRNA upstream 130721 34489410 ~ 34521342 (-) True XLOC_004248
TCONS_00008088 other downstream 349253 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 944158 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1577932 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 3143271 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3806734 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008105 other upstream 107706 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 866333 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2940682 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3816382 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 4589298 38947987 ~ 38949751 (-) True XLOC_004305

Expression Profile

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