RNA id: TCONS_00008097


Basic Information

Item Value
RNA id TCONS_00008097
length 1538
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_004241
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34201183 ~ 34219211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTAAGCTTGTGGGCGTTACTGAAATGATACAGGTGATTGAATGGCGTTCATTCATCCACATGATACAGCTGGCAACTAAAGATTGAAGCTAGATCCACTTTTCAGCAGAAGTGAAATAAATGGATAAAAGTATGTTTTTAGACACGGTCTTTCGATGGAGCCCGGAGTTTGTTAAAGGTTGTCTTTCGACATATGAAGAACATATTTGCACTTCGGCTGGTTTTTACATCTTGTCTGCTTTGATATTACTGGTTTCCTGTTCTCTgcttCTTTATCACAGATGTAGCGTTAAAACGCGAAGCAAGAATTGGGGTGATGAAGCGGTCTGCGCGCTGTATTGTTTCGTCGGTAATTTGTGCAGCGCAGTGGGCGCTTTCCTTTCCAACCAGTTTGATTTTCAGATTTCTATGGCATCATACATGGCAATTATGGATGTTGTGAATTTTCTGTCAATATCTTTCTCCATGTATTTATGGTTTAAGTCAAGAACAGGAAGGAAAATGAGAATGATTTCAAGAAGGAGGAGACAGAACTTTCTAGCGGTGTGTTTGCTGTTTATTATGGCTGGCAGTGTTTACTTGGGTTTACCAGTCCGTTCAATTCCAGTAAGAGCATCTCCAACCATGAGGAGATTATTTGGCATGTTCCTCAATGACCATACTGAGAACCTCGGTTATGTTCTGGGTCTTCTGGCTTTCGCTATCAGCTGGACCTCCAAGTTTCCCTTCATCTTGAAAGCTAACAGAGGAGAGCAGGGATCTGCAGTGCTGGTGTCCTCCAGACTCCTGTCTTCTGTAGCTGGAGCTCTTTATGGATCTGCTATTCTTCTCTACGACACACAGCTAAAATCAGTTATCAAGACAATGCCATGGATACTCTCTGCTATCTGTGGTTCCATTCTGGATCTTTCTATTGTGGTCCTCGTCTGTTACAGATCCAGTCACAAGCGTCCCTCTGTGCGCTCTTTAGACTCGGACACTGAGTCTTTACTGGGTGAACCTTCAGTCACAGGTCAGCTATGCAACAACAATGAATGTTGCAGGAAGAAACACCATCTTTCCACTGCAAGAGGTATCTCTCCCAAAGGAACAGACATGGGACTCTACATGGATGTCAACATACAGCCAATGAGAAAGGTTTGTCTGAAGGAGGTGACCATCTCGCGGGACGGCTCCTCAGAGAGTCTTCCTCTGAAGAGGACTGTCAGGGTGGTGCGGGTTGATGAACACTGTTCCTGTGGCAGCTCCACTGACTCGTCCTCTCTCGACTCTGAACTAGAGTGGGACTTTGGAGAAACAAAATCGCAGTGGACGCCGGTAGAAGAAGCTCCAGAAGATCTGCAGAAAGTTATGCCTCTCCAGGAATGGTCAGTGGGTTCGAGTGGCAGACTAGGATCTCATGTCTGCTTCTGCAACCGTGCACAGCTGGCAGAGAAATTGGCCTCCAAATAGACAGGTGCCACTAAATCCAGTGCTGTTTCGTCATTAATGCATTTGAGTGTTTTTGAAGTCAAATAAAGCAGTGTATTTCACATTCA

Function

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015174 basic amino acid transmembrane transporter activity molecular_function
GO:0015181 arginine transmembrane transporter activity molecular_function
GO:0015189 L-lysine transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-65 Predicted to enable L-lysine transmembrane transporter activity and arginine transmembrane transporter activity. Predicted to be located in membrane. Predicted to be active in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human TMEM44 (transmembrane protein 44).

Ensembl:

ensembl_id ENSDART00000098472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008482 lncRNA downstream 208036 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008832 lncRNA downstream 512234 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 515272 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 799707 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008480 lncRNA downstream 856726 33339539 ~ 33344457 (-) False XLOC_004227
TCONS_00008099 lncRNA upstream 1139 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 3682 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 30245 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 96314 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008834 lncRNA upstream 331636 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008095 mRNA downstream 12837 34154593 ~ 34188346 (-) False XLOC_004240
TCONS_00008096 mRNA downstream 34223 34158178 ~ 34166960 (-) True XLOC_004240
TCONS_00008094 mRNA downstream 49696 34151177 ~ 34151487 (-) True XLOC_004239
TCONS_00008092 mRNA downstream 53978 34116734 ~ 34147205 (-) False XLOC_004238
TCONS_00008093 mRNA downstream 76864 34118359 ~ 34124319 (-) True XLOC_004238
TCONS_00008098 mRNA upstream 780 34219991 ~ 34232906 (-) False XLOC_004242
TCONS_00008103 mRNA upstream 182249 34401460 ~ 34480822 (-) False XLOC_004246
TCONS_00008104 mRNA upstream 183205 34402416 ~ 34478225 (-) True XLOC_004246
TCONS_00008106 mRNA upstream 269658 34488869 ~ 34522249 (-) False XLOC_004248
TCONS_00008107 mRNA upstream 270199 34489410 ~ 34518362 (-) False XLOC_004248
TCONS_00008088 other downstream 234911 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 829816 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1463590 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 3028929 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3692392 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008102 other upstream 136333 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 247184 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1005811 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3080160 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3955860 38175071 ~ 38175150 (-) True XLOC_004294

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07847872_07854953.mRNA True 1222 mRNA 0.46 8 CI01000306 7847791 ~ 7854953 (-)