RNA id: TCONS_00008480


Basic Information

Item Value
RNA id TCONS_00008480
length 840
lncRNA type intronic
GC content 0.41
exon number 2
gene id XLOC_004227
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33305132 ~ 33401476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGGAACAATGCAGATACTCATTTCATGAGTTGATATTTGACTGAATATGATATGCGGTCCGGGGAGAGAGCTCCGAGCTCGGAAAGACACCCtaaagctgcctttccactgcacacgacattcaGACGCGGCTGTCGGAATACACCCCCTAGTGGCATCCACACAGAATATTCAGGTTTGTTGTGTACCATGGGAAGCTGATTCTCGTGGTGGTGTCAGAAATAAAGTGGTGCTAagactgtgGCTTAATGTCCTGGGACATCAAGTAACCGCAGGCTAATGAGATGGCCAAACCCCAGACGCTTGACACGGAATTCAATTAGACTGCACCCTCCCTGTCTTTCACACTGAGGTAAGAACTGGCGTGAGAAAAATCCATTGGGAAAAAAGTGCTTGTCTGAGTGTGAAAAAAGAACAAGAGCAATGGAGAAATAACATCACATTACACATACAGCAGACATTTTAACCTGATCAGTCACTGAGTGGGAAATATTCTGTGCAACAAACCAAAGTCTGATATATTTCACTGTGTTGTAAACTAATTTGGTCAAAAGTAACGATATTATGATATTTGGTTTTGGTGTTATGGCACACAACAGTCTATTCTCTCCCACCAGTTTCATTTTATGAGTTTATCCAGAGTTTTCAGTGGCTCCATGTGCATTTTAGGTTTCAGTTAAatcacgcaaaaaaaaaaaaaaaaaaaaaaagtttggagaACTCAATACACAAGGGTTTGTTTGTGCATCTCTTTCTCAATACGCAAATGCTGATCTCTCTTTTATATAATTGTGCACTTCAACAGATAAGCTAAATATTCGGTATGTCAGAATAGCAG

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008077 lncRNA downstream 140935 33190658 ~ 33198604 (-) True XLOC_004226
TCONS_00008076 lncRNA downstream 148141 33190658 ~ 33191398 (-) False XLOC_004226
TCONS_00008478 lncRNA downstream 159744 33163180 ~ 33179795 (-) False XLOC_004225
TCONS_00008477 lncRNA downstream 159744 33163180 ~ 33179795 (-) True XLOC_004225
TCONS_00008476 lncRNA downstream 356671 32977954 ~ 32982868 (-) True XLOC_004224
TCONS_00008481 lncRNA upstream 525 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008831 lncRNA upstream 332377 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008832 lncRNA upstream 332377 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008482 lncRNA upstream 647576 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008099 lncRNA upstream 875893 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008074 mRNA downstream 615688 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1466911 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 2063459 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 2063475 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008069 mRNA downstream 2112961 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008079 mRNA upstream 253756 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 254157 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 501983 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 516720 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 519811 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008075 other downstream 601946 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2167285 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 2830748 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 2974715 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 3183704 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008078 other upstream 26794 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 621701 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 1011087 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 1121938 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1880565 35225022 ~ 35225139 (-) True XLOC_004254

Expression Profile

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