XLOC_004204 (pecr)


Basic Information

Item Value
gene id XLOC_004204
gene name pecr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30355442 ~ 30364847 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008051
GACTTTTATCTTACAATATTATACTCTGGTTGTTTCGCTGTCGTAGTCAACATGGCAGCGTCCAGTGTTTTTAAAGCAGGTCTTTTCAATCACAAAGTCGCAGTCGTGACGGGTGGCGGGACTGGCATTGGAAAAGCCATCACTTCTGAGCTCTTACAGTTAGGATGCAGTGTGGTTATATCGTCCAGGAAGCTGGAGCGTCTGAAGTCAGCAGCGGAAGAGCTGACACTGAAAATCCCTTCATCCAGTCCAGCTAAAGTGACCCCTATAGAATGCAACATCCGCAATGAAGATGAGGTGAAGAACCTGATGGCCTCTACACTAAAGCTTCACGGGAGAATCGACTTTTTGGTGAATAATGGAGGTGGCCAGTTTTCCAGTCCGGCAAACATGATGAGTGCAAAAGGCTGGAAGGCTGTGATCGACACCAACCTCAATGGAACGTTCTTATGCTGCAGAGAAGCATATAATGCCTGGATGAAGGACCATGGAGGTGTAATCGTGAATATCATTGCTGACATGTGGAAAGGCTTTCCTGGAATGGCGCACACAGGAGCAGCTCGAGCAGCGGTGGACAACCTGACCAAGAGTTTGGCCATAGAGTGGGCTCACAGTGGGGTCCGCATAAACTCTGTGGCGCCGGGAACAATCATCTCCAAAACTGCTATGGAAAACTACAAAGAATATGGGCCTACTTTGTTTAAGATGTCAGTGCCATTCAGTCCTGCTAAAAGACTCGGTGTTCCTGAGGAGATATCTCCGGCTGTGTGTTTCCTGCTGTCTCCGGCTGCCAACTATATTACTGGAGCAACCCTGAAGGTGGATGCAGGACAGAGCCTTTACCACTCCATCTGGGAAATCCCAGAACACGATGCCTGGCCTGAAGCTCCAGAGGGAGAAAATACAGACGTGCTGAGAGAAATCATGGACAAGACTAAATCCAAGCTGTGAATCAGAGGAAAACAAGTCTAGACTGTCAAAACAGCTGCTCTTCATCAATGTGGGTGGAAGACAAATGCTTTTGCTCGGAATTGTAACACGTCTCGACTGTGGCCTTTGGAGTGAATCTCACTGAATATTTTATTGCGTAATTGAGCTCTAATAGTTCATAAGGAactgtgtaaatatgtgtaataATATGGTATTGTGAATTTAACAATTGTGATTAATATTTCCAAAAATAACTTTGATCAGCCATCATTGTAAGattacaaatatgtaatgtatttttaaaaaatacattttttgttgtgacAACTTTTAAACAAATTCATTAGT
>TCONS_00008052
CTCTGGTTGTTTCGCTGTCGTAGTCAACATGGCAGCGTCCAGTGTTTTTAAAGCAGGTCTTTTCAATCACAAAGTCGCAGTCGTGACGGGTGGCGGGACTGGCATTGGAAAAGCCATCACTTCTGAGCTCTTACAGTTAGATGGCATTGCTTGGCCTTTGTAGCAGCATCAAACTGCTCCTCACAAACGAGGTGTTGTGatcatatattaactgaaattCTTCACGCCGCTgcttgagGATGCAGTGTGGTTATATCGTCCAGGAAGCTGGAGCGTCTGAAGTCAGCAGCGGAAGAGCTGACACTGAAAATCCCTTCATCCAGTCCAGCTAAAGTGACCCCTATAGAATGCAACATCCGCAATGAAGATGAGGTGAAGAACCTGATGGCCTCTACACTAAAGCTTCACGGGAGAATCGACTTTTTGGTGAATAATGGAGGTGGCCAGTTTTCCAGTCCGGCAAACATGATGAGTGCAAAAGGCTGGAAGGCTGTGATCGACACCAACCTCAATGGAACGTTCTTATGCTGCAGAGAAGCATATAATGCCTGGATGAAGGACCATGGAGGTGTAATCGTGAATATCATTGCTGACATGTGGAAAGGCTTTCCTGGAATGGCGCACACAGGAGCAGCTCGAGCAGCGGTGGACAACCTGACCAAGAGTTTGGCCATAGAGTGGGCTCACAGTGGGGTCCGCATAAACTCTGTGGCGCCGGGAACAATCATCTCCAAAACTGCTATGGAAAACTACAAAGAATATGGGCCTACTTTGTTTAAGATGTC
>TCONS_00008053
GTAGTCAACATGGCAGCGTCCAGTGTTTTTAAAGCAGGTCTTTTCAATCACAAAGTCGCAGTCGTGACGGGTGGCGGGACTGGCATTGGAAAAGCCATCACTTCTGAGCTCTTACAGTTAGGATGCAGTGTGGTTATATCGTCCAGGAAGCTGGAGCGTCTGAAGTCAGCAGCGGAAGAGCTGACACTGAAAATCCCTTCATCCAGTCCAGCTAAAGTGACCCCTATAGAATGCAACATCCGCAATGAAGATGAGGTCACAGTATTATAAGTCTGCATATGCAAATACACTGCCTTTATGCCAGAGAATTCTTTAAAgaataaccatttaaaaagtcatattttggtttcCAGTTGAATGTTTTCCTAATAATAGCCATACACATTTATTACACATAATATGATTGAAAATGTATGTACACGTAACTTAAtgtttttgattttaaatatatttggcatttcttccaaattttaaataattttttttattgcataaaataacaaaaatgtcatggttttattctttttttttttttttagataaaacaagagttaaaaaaaatcttatgtttGGTGGGATAacaaatgacaacattttaacatttttattttggccaATTGTCACATTTTGAGTAATTAGAAATTACCTAAATGACAAGACTTTACCTTAAAATTTCTAAGAAATGTCATCAGACCTTTATAGTATAAACAAATCTCAGATCTCAAaacacagaatctgcagacatcttttgctatttctgcacagaatgtTGTACAAAATGTGcagatttatgctgaatgatttcTAAGTGAGG

Function

symbol description
pecr Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in phytol metabolic process. Predicted to be active in peroxisome. Orthologous to human PECR (peroxisomal trans-2-enoyl-CoA reductase).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0033306 phytol metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-050417-232 Predicted to enable trans-2-enoyl-CoA reductase (NADPH) activity. Predicted to be involved in phytol metabolic process. Predicted to be active in peroxisome. Orthologous to human PECR (peroxisomal trans-2-enoyl-CoA reductase).

Ensembl:

ensembl_id ENSDARG00000055976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008051 False 1278 mRNA 0.44 8 30355442 30364847
TCONS_00008052 False 785 processed_transcript 0.48 7 30358109 30364824
TCONS_00008053 True 814 lncRNA 0.33 2 30361628 30364805

Neighbor

gene id symbol gene type direction distance location
XLOC_004203 tmem169a coding downstream 3109 30348273 ~ 30352333 (-)
XLOC_004202 cflara coding downstream 14011 30332959 ~ 30341431 (-)
XLOC_004201 scml2 coding downstream 196833 30106182 ~ 30158609 (-)
XLOC_004200 CR318645.1 coding downstream 254185 30101142 ~ 30101257 (-)
XLOC_004199 ace2 coding downstream 359085 29981678 ~ 29996357 (-)
XLOC_004205 map4k3a coding upstream 821 30365668 ~ 30508851 (-)
XLOC_004206 slc8a1a coding upstream 171096 30535943 ~ 30612166 (-)
XLOC_004207 zgc:153665 coding upstream 261921 30626768 ~ 30636163 (-)
XLOC_004208 ier2b coding upstream 673562 31038409 ~ 31039533 (-)
XLOC_004209 si:cabz01069582.1 coding upstream 779873 31144720 ~ 31146808 (-)
XLOC_004063 CR854846.1 misc downstream 14227764 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 17663751 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 17733675 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 17764146 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17842180 12512966 ~ 12513262 (-)
XLOC_004198 CU652893.1 non-coding downstream 393541 29961114 ~ 29961901 (-)
XLOC_004193 NA non-coding downstream 618195 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 810453 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1035523 29099927 ~ 29319919 (-)
XLOC_004211 NA non-coding upstream 835372 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 840078 31204925 ~ 31211308 (-)
XLOC_004216 NA non-coding upstream 1785371 32150218 ~ 32157526 (-)
XLOC_004217 NA non-coding upstream 2001065 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 2092469 32457316 ~ 32563722 (-)

Expression


Co-expression Network