XLOC_004202 (cflara)


Basic Information

Item Value
gene id XLOC_004202
gene name cflara
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30332959 ~ 30341431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008049
ctcgctggagctcagctctgcctaaatggctctgcagtgagcaccactacTTGTCTCGATCGACCGGAACAGGGCGTGACTTCGCGTAACTCAAAGGCTTTGGTAACTTTGCTTTCGCTTTTGCTTCAGTTTGTCACGATGGCGACGTACGACGTAAAAgtgTCAGCAAAAGATGAAGCTCGCTGCTGGCAAAACCACCAAAGAATTTGGTGCTCCAAATTAAGGTCACTGAAGGTGTAAATCCAAAGTGGCTACATTCTTCCATTCTGTCAAGATAAATGcaattttcattcattgattgcaaaaaaaaaagaaaaagaaaagaaaaagaaaatacagcCCTTTTTCTAGACTAActtaattagattttaaaaatgcatagaAAATTcaattctgcttttaaaatgaCCCAAACTATTACCTAAAGTATTTATACAACACCATACGGTGAAATGGCAGATGGATTTTCTACTCTGGTTAACAAAGTGACCGCATCTCTTAGCAGCGACGAGTCTAAGATCCTGCTGTATCTTTGCACTGATTTGTTCAACAACAGTTGTGTGGAAGAACTGAGAGGAGATTTGCTGGCCTTTGCCCAACAGAACCCCAATCAAGCAGGTCAACCTCATTCTGGAAATGCTCTGCTGATGGAGCTCATGTTTCAAATGAAGCGCTATGATTTACTACGCAAAGTTTTTGGCACCAACAAACAACAGGTAGAAGGAATTCTCAGAAAGGAGCGCGTCATCTCAGATTACAGGGTTCTAATGGCAGATGTGAGTGAAAACTTGGATAAAGAGGATTTACAATCTCTTATCTTCCTCCTAAGCAGTATCCTGCCCAAAGAAAGATCAACTAGAGCTACTAGCTTTCTAGATGTGGTGGTGGAGTTGGAGAAATTAAATGAAGTATCTTGTGAGAAGCTGGACTTTCTtgaaaagtgtcttaaaaatattcgCAGAAATGACCTTGTCAAAAAAATTCAGGCGTACAGGAATAGAGgtCAGAACATGCCATGTGCCGCTCCAAATACCTTTAAGttcaCCCCTATGCAGTGTCAGCCTTTTGAAAAGCAAGTGAGACAATCACAGTGCTTCAATCATGAGTTCAACAAATTGAAGCTTTCTGTGCCTGAAACAGGGATTCACTATCAACAGGCTATTACAGAGGAGTATCAAATGAATCCCGAACAAAGAGGCCTGTGTGTGATTATTGACTGTGTTGGCTATGATGGAGAAATGTTGAAGCACACGTTCGAATGTCTGGGATTCAAGGTCGTTTTTCACTCTCTCTTGGGTCTGAAGGAAACCCAGAAGGTTTTGGAAGATCTGAGCCTGAACAGAATTCTTCAAAGGGTCAGATGCTTTGTCTGCTGCCTCATCAGCAGAGGAACAAACACTCATCTGTTGGCTACCGACTCGAACAGGCTCGGCATCAACCTGAAGGATCTTAAACAGCTTTTCAACGCAACCAAGTGTCCAAAAATCTTCTTCACCCAGCTCTACAGGATCACAGAAGCCCCAGTAATGCCCTCAATGGATGACGAATACCTTGAGACAGATGCACCAGCTTCCAGGCAGTGTTCAAACACAGGAAGTGTTCCAATGCCAGCGGACGTCCTCTGGAGTGTCTGTACAGCAGAGGTAAAACTGCTGGAAGAGTCCGGGCACCAGTCGGTTTACCTGAATGCATTGAACAATGCTTTATTGAAAGGACATGAGAGAAATGTGCCCATATTGGATGTCATGAAGGAGGTACAAAGAAATGTGTTGAGTCACGATTCTGACAATTACCAGCTTCAGCAATCTcacacactacagaaaaaacTCTACTTATAAGGACAACACAACACAAACCACTCCATACTTTGGTTTCTGTTTTCTTACAAACGCTagtaaaaaatgtttgtaaacaaaaCGCTGCTGCTAGAGTAAAAACTTAGCATAGCTACATACTGCCATTAATGCTGTATTATTCAAGTATGTTTTgttatatgtttgtttaatatttatttgtcacTTGTGGCAGCTAATACAAAAATGTTCTCATTTGCAGTCAGAGTACTATCGTCCTGAATACCCTTAAGTCATTAGTCAagatgttgtttatttgtttattgcttCTTAAATACTAATCAGAGCAGctttacattcacacatacatacagattACATTTGAATGCTCCAAAGCAGAAAAGCAACGACAACTGGCAGTGAAAACACTACTGAACACCACTTTTATATTCCATCTTGCATATAAAACTCTATATAACC

Function

symbol description
cflara Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process; apoptotic process; and negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within proteolysis and regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human CFLAR (CASP8 and FADD like apoptosis regulator).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-3 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process; apoptotic process; and negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within proteolysis and regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human CFLAR (CASP8 and FADD like apoptosis regulator).

Ensembl:

ensembl_id ENSDARG00000055966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008049 True 2273 mRNA 0.41 11 30332959 30341431

Neighbor

gene id symbol gene type direction distance location
XLOC_004201 scml2 coding downstream 174350 30106182 ~ 30158609 (-)
XLOC_004200 CR318645.1 coding downstream 231702 30101142 ~ 30101257 (-)
XLOC_004199 ace2 coding downstream 336602 29981678 ~ 29996357 (-)
XLOC_004198 CU652893.1 coding downstream 371058 29961114 ~ 29961901 (-)
XLOC_004197 pir coding downstream 386032 29917613 ~ 29946927 (-)
XLOC_004203 tmem169a coding upstream 6842 30348273 ~ 30352333 (-)
XLOC_004204 pecr coding upstream 14011 30355442 ~ 30364847 (-)
XLOC_004205 map4k3a coding upstream 24237 30365668 ~ 30508851 (-)
XLOC_004206 slc8a1a coding upstream 194512 30535943 ~ 30612166 (-)
XLOC_004207 zgc:153665 coding upstream 285337 30626768 ~ 30636163 (-)
XLOC_004063 CR854846.1 misc downstream 14205281 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 17641268 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 17711192 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 17741663 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17819697 12512966 ~ 12513262 (-)
XLOC_004193 NA non-coding downstream 595712 29734578 ~ 29737247 (-)
XLOC_004190 NA non-coding downstream 787970 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 1013040 29099927 ~ 29319919 (-)
XLOC_004211 NA non-coding upstream 858788 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 863494 31204925 ~ 31211308 (-)
XLOC_004216 NA non-coding upstream 1808787 32150218 ~ 32157526 (-)
XLOC_004217 NA non-coding upstream 2024481 32365912 ~ 32391388 (-)
XLOC_004218 NA non-coding upstream 2115885 32457316 ~ 32563722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_05879886_05883498 NA coding CI01000306 null 5878738 ~ 5884232 (-)