RNA id: TCONS_00008049


Basic Information

Item Value
RNA id TCONS_00008049
length 2273
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_004202
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30332959 ~ 30341431 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcgctggagctcagctctgcctaaatggctctgcagtgagcaccactacTTGTCTCGATCGACCGGAACAGGGCGTGACTTCGCGTAACTCAAAGGCTTTGGTAACTTTGCTTTCGCTTTTGCTTCAGTTTGTCACGATGGCGACGTACGACGTAAAAgtgTCAGCAAAAGATGAAGCTCGCTGCTGGCAAAACCACCAAAGAATTTGGTGCTCCAAATTAAGGTCACTGAAGGTGTAAATCCAAAGTGGCTACATTCTTCCATTCTGTCAAGATAAATGcaattttcattcattgattgcaaaaaaaaaagaaaaagaaaagaaaaagaaaatacagcCCTTTTTCTAGACTAActtaattagattttaaaaatgcatagaAAATTcaattctgcttttaaaatgaCCCAAACTATTACCTAAAGTATTTATACAACACCATACGGTGAAATGGCAGATGGATTTTCTACTCTGGTTAACAAAGTGACCGCATCTCTTAGCAGCGACGAGTCTAAGATCCTGCTGTATCTTTGCACTGATTTGTTCAACAACAGTTGTGTGGAAGAACTGAGAGGAGATTTGCTGGCCTTTGCCCAACAGAACCCCAATCAAGCAGGTCAACCTCATTCTGGAAATGCTCTGCTGATGGAGCTCATGTTTCAAATGAAGCGCTATGATTTACTACGCAAAGTTTTTGGCACCAACAAACAACAGGTAGAAGGAATTCTCAGAAAGGAGCGCGTCATCTCAGATTACAGGGTTCTAATGGCAGATGTGAGTGAAAACTTGGATAAAGAGGATTTACAATCTCTTATCTTCCTCCTAAGCAGTATCCTGCCCAAAGAAAGATCAACTAGAGCTACTAGCTTTCTAGATGTGGTGGTGGAGTTGGAGAAATTAAATGAAGTATCTTGTGAGAAGCTGGACTTTCTtgaaaagtgtcttaaaaatattcgCAGAAATGACCTTGTCAAAAAAATTCAGGCGTACAGGAATAGAGgtCAGAACATGCCATGTGCCGCTCCAAATACCTTTAAGttcaCCCCTATGCAGTGTCAGCCTTTTGAAAAGCAAGTGAGACAATCACAGTGCTTCAATCATGAGTTCAACAAATTGAAGCTTTCTGTGCCTGAAACAGGGATTCACTATCAACAGGCTATTACAGAGGAGTATCAAATGAATCCCGAACAAAGAGGCCTGTGTGTGATTATTGACTGTGTTGGCTATGATGGAGAAATGTTGAAGCACACGTTCGAATGTCTGGGATTCAAGGTCGTTTTTCACTCTCTCTTGGGTCTGAAGGAAACCCAGAAGGTTTTGGAAGATCTGAGCCTGAACAGAATTCTTCAAAGGGTCAGATGCTTTGTCTGCTGCCTCATCAGCAGAGGAACAAACACTCATCTGTTGGCTACCGACTCGAACAGGCTCGGCATCAACCTGAAGGATCTTAAACAGCTTTTCAACGCAACCAAGTGTCCAAAAATCTTCTTCACCCAGCTCTACAGGATCACAGAAGCCCCAGTAATGCCCTCAATGGATGACGAATACCTTGAGACAGATGCACCAGCTTCCAGGCAGTGTTCAAACACAGGAAGTGTTCCAATGCCAGCGGACGTCCTCTGGAGTGTCTGTACAGCAGAGGTAAAACTGCTGGAAGAGTCCGGGCACCAGTCGGTTTACCTGAATGCATTGAACAATGCTTTATTGAAAGGACATGAGAGAAATGTGCCCATATTGGATGTCATGAAGGAGGTACAAAGAAATGTGTTGAGTCACGATTCTGACAATTACCAGCTTCAGCAATCTcacacactacagaaaaaacTCTACTTATAAGGACAACACAACACAAACCACTCCATACTTTGGTTTCTGTTTTCTTACAAACGCTagtaaaaaatgtttgtaaacaaaaCGCTGCTGCTAGAGTAAAAACTTAGCATAGCTACATACTGCCATTAATGCTGTATTATTCAAGTATGTTTTgttatatgtttgtttaatatttatttgtcacTTGTGGCAGCTAATACAAAAATGTTCTCATTTGCAGTCAGAGTACTATCGTCCTGAATACCCTTAAGTCATTAGTCAagatgttgtttatttgtttattgcttCTTAAATACTAATCAGAGCAGctttacattcacacatacatacagattACATTTGAATGCTCCAAAGCAGAAAAGCAACGACAACTGGCAGTGAAAACACTACTGAACACCACTTTTATATTCCATCTTGCATATAAAACTCTATATAACC

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-3 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process; apoptotic process; and negative regulation of extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within proteolysis and regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human CFLAR (CASP8 and FADD like apoptosis regulator).

Ensembl:

ensembl_id ENSDART00000078378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008040 lncRNA downstream 371058 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 411957 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 570948 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 595712 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008023 lncRNA downstream 675089 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008053 lncRNA upstream 20197 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008812 lncRNA upstream 858788 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 863494 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 1808787 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 1813523 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008046 mRNA downstream 174350 30107447 ~ 30158609 (-) False XLOC_004201
TCONS_00008045 mRNA downstream 174736 30106182 ~ 30158223 (-) False XLOC_004201
TCONS_00008047 mRNA downstream 174768 30151238 ~ 30158191 (-) False XLOC_004201
TCONS_00008044 mRNA downstream 194660 30106182 ~ 30138299 (-) False XLOC_004201
TCONS_00008041 mRNA downstream 336602 29981678 ~ 29996357 (-) False XLOC_004199
TCONS_00008050 mRNA upstream 6842 30348273 ~ 30352333 (-) True XLOC_004203
TCONS_00008051 mRNA upstream 14011 30355442 ~ 30364847 (-) False XLOC_004204
TCONS_00008054 mRNA upstream 24237 30365668 ~ 30508843 (-) False XLOC_004205
TCONS_00008055 mRNA upstream 26207 30367638 ~ 30508851 (-) False XLOC_004205
TCONS_00008057 mRNA upstream 194512 30535943 ~ 30611814 (-) False XLOC_004206
TCONS_00008048 other downstream 177124 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 231702 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008039 other downstream 386319 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008033 other downstream 423334 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008030 other downstream 516757 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008052 other upstream 16678 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008056 other upstream 82795 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008067 other upstream 828918 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008075 other upstream 2389734 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 3029820 33371251 ~ 33371367 (-) True XLOC_004227

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05879886_05883498.mRNA True 3256 mRNA 0.38 7 CI01000306 5878738 ~ 5884232 (-)