XLOC_004197 (pir)


Basic Information

Item Value
gene id XLOC_004197
gene name pir
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29917613 ~ 29946927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008035
AGTTTTCTTAAAAGGCTCTCATTTTCTTAGCCTCACATGTCATATGTAAATGCACAGTCACTCTTTTGTGGCTCACAATATTGCATAGTCATTGTGACATGCACTGCGCCTTTAAATAATCCGAATCTGAAGAGATGTCATCTGCAAAGGAAGTAAGCCATGACAAACCCAAAACGTCAACACAGTATAAAAACACACCTGTCGTAGCATGAACTACTGTATATACAACAGCGAATAATAGTGTAGTGGGCATTTGTGTATAAATAAGCGTCTTGATCAGTCTGGGTGTATTGGTGGCGCTCACAAACTGAGAGCTAGCTATTGTGATAGGGAGATATATACAGTAGGTGTTTATGATGATCAGAAAAGTTTCTAAGGTGGTTTTGAGCGTCGAACAGTCCGAAGGAGTCGGGGCTCGAGTTCGCAGGAGTATTGGACGGAGAGAGCTAAAAAATCTAGACCCGTTCTTGATGTTAGATGAATTCTGCATCGCCAAACCAGCTGGCTTTCCTGATCATCCTCACCGTGGATTTGAGACGGTAACATACTTGTTGAGTGGAGTAACGGCCCATGAAGACTCCTGTGGTCACAGCGGGAAGCTGGAACCTGGAGACCTTCAGTGGATGACTGCAGGTCGTGGGGTGATTCATGCTGAGATGCCTGTGTCGGATGGACGCATTTATGGTCTTCAGCTTTGGGTAAATCTGAAAAGCACAGATAAGATGGTGGAGCCTCAGTACCAGGAGCTAAAGAGCAAGGAGATTCCTAAACCTAGCAAAGATGGAGTCACTGTGACCGTCATCTCTGGTGAAGCTCTTGGAGTAAAGTCAAAGATTTACACGAGGACTCCAACCATGTATCTTGACTTTTTGCTGAAGAAAGATGCAAAACACATGCAGCCTGTTCCAAAAgGTTGGACAGCTTTCATCTACACCCTCGCAGGTTCTTTATGCACTGGCCCAGACAATGATTTGCGGACAATAGAGCCACACCACACGGTGGTTTTGGAAGGTGGTGACTGCGTCAGAATGGAAAACAAGGCTGCTGAGGACTCTCACTTTGTGTTAATTGCTGGCGAACCCATTAATGAGCCTGTAGTTCAGCATGGGCCCTTTGTCATGAACACACAAGAAGAGATTGACAAGACCATCTCAGACTACAGATCAGCCACTAATGGATTTGAGAGAGCAAAAGTCTGGCGATCAAAGATTGGTCAACAGTTTTAAAGTGTCTTCAAGATCCTTCTCTGAGGGAATATATCTACTTTGGTGCCTTTACCTTCAGCTTCAGCAGCTCCGAACATACATTAGGCCAGGGAtcactaaacttgttcctggtggtctggtgtcctggagattttagctccaaccctaatcaaacacacctgaacaagcgaatcaaggtcttactaggtatacttgaaacacccaggcaggtgtgtcgaggcaagttggagctaaaccctgcagggcaccagacctccaggaacgagattggtgacccctgcattaggATATTTAAATTGTACAactgacatttattttaaagcaagATAGTatgtactgaaattttaaataaagtattagtCGTCTTTCTAGTATGTTTATTAATAGATATTGTGCTCAAGGACACTTTCATACATCAGCTTAAATCATCTCAGGGCTCAGTGGGTAAAGTCAATTGAATTTGTTGATGACTGCATATAATACAATGACACTGATATATTTTATGTGTAACTTAAGGGTCCAAAATATGCTTTATATGTGGAATGTTACTCAAAATATTGCTGACCATTACATAGGCCATTTATTCTGATGtattgcttaaaatgtgtgtgactTTCCTATGTACTATTTCTGTTTTTGGTTTGTACTATGTCTCTGTATCTGATCACAACATGATTTTCTTACCTAAAA
>TCONS_00008036
GGAAATTAAGCATGCATTCATTAAACGGTATATAATCCACCTGTGACTTCAAAAGAGTTTTGACTTTCATTGTTCTCTGAAATACAATTAGCATAAATGGAGCAGCTGTTGTGAAACTGACATCTTGAGAAATTATCTTAAGTGAGTGGGTGGGATAAGATCTAGGACCATCTTTGCTTTACAAAACATCTCCTTGCTGACATTTATTCTGGTGTGTAAGGTATCTTGTCTTCAACAACCATGAGTCAACCTCAAGTTATTAGCCAAGTTTAGTTATGTAAAATGATCTATAGTGTATAATTTGTATAGGGTTGTGAAATCATTTTGGCTggaaacttatttttatttcaattccCTTAGGCCCAGACAATGATTTGCGGACAATAGAGCCACACCACACGGTGGTTTTGGAAGGTGGTGACTGCGTCAGAATGGAAAACAAGGCTGCTGAGGACTCTCACTTTGTGTTAATTGCTGGCGAACCCATTAATGAGCCTGTAGTTCAGCATGGGCCCTTTGTCATGAACACACAAGAAGAGATTGACAAGACCATCTCAGACTACAGATCAGCCACTAATGGATTTGAGAGAGCAAAAGTCTGGCGATCAAAGATTGGT
>TCONS_00008037
GAATTCAACTCAGCAAAACCAGAACTAAAAGTGTAAACcacaaaaacaaaaagagcaCCTCCAAGCCAGTGTCTGGAACAGAGAATGAGACCAAATGTCTGCCATGTCCTCCAATACACTTCAAAGTGGTGGATTCTTATGGAAAATGGACAATTCTTTGGGAAAGTCAGTTTACTGCCCTGAACATCCCTCACCTTCGATCACACATGTTGGTACACACAGATCCATTTAACAAGAAAGCCTTGCAGGACTTTGTGTTGGAGCAAAATCGGGAGGCGGAACTGCACAGTCTACCTGAGCAAATGTACATTCAGGACGAGCATGCCTTTTTTAATGACAATCGCCTGGGAAAGAAAGACAAAAAGCTGCTTAGCACAACAAAAGGCCTGCAGAAAAACCTGTATTTCAGTCTTCCAGGAACACAGCTCAGTATTGACTTCTTCCAGGAGCAGGTTCGCAAATATGACCTGGAGAGTGTCTTAATCAAAGCCACGGTGGACAGAATCATCCCAGTCTTAACTGAGGACGAGAGCAATGTGAAGTTTTTCAAGGTGACGCTACACACTGGGGAAATTATAGAGGCGAAATCAGTGATCATGGCGACGGGGCCCTCAAGGGCGCAGATGGCAAACATCCCATGCTGGGTGCAGGCAATCCAGGAGAACTACCCAGAGGAAAGTCTGCGACACACCGTGCAGCTCATGCATAACTTCTGTACACATGAAGAGCAGGGTGAACATTCTTCAGGTTCTCCAACTGTGTGTCAGATGGGTCAGAGAGTTATGGTGGTAGGTGGAGGTTTGACCAGCGCCCATGTTATTTCCATTGCACTGAAACAGGGTGCATGTCATGTGACCTGGGTCTTACGTAAACACTTACAGCTGAAGCAGTTTGACGTTGGGGATGTTGAGAGTCTTATTGGACGCTATTCACATGTTGAGCATGGGATCAAATTAGATGGCCTGGCCTACTTAAAGCAGTTCTATAATGAAAGAAGTCTTTATAAAAGACTAGTAATGATAAAACAAGCCAGGAAAGGAGGAGCAGTGACCCCTGAGGCCTATGCACAACTTCAGCCTTTTATTCAGAGCGGAAAGCTGCTCATCAGAGCTCACTGTCAGGTGACCAAAGCTAAATGGTGTTATGAGTCTCAGCAATGGAGGGTCTCCTTGTGCAGTGGCGAACAATGGAGAGGAGAACAGATTTGGCTGGCAACTGGCTGCAAACTGGATGTCACTCAGGACCCTTTACTCTCTGATGTCAAGAGACAATTCCCCATTCATgtcctggagggctggcCATGCATAACAGAATCTCTGAAGTGGACAGCAGGATGCCCTCTCTATCTGATGGGACAATATGCAGCACTTCAGGTTGGGCCACATGCTGTGAACCTTGCAGGGGGTCAAGCTGCAAGTATACGGATTTTCAAAGACCTCATAGCTCAAAACAGTGGACTAGAGGAGAGTAAAAAAGCATGCATGGAGAAGACCTGCACTGAAGAGTACATTTCACACATGCATGGTCTCATGTGGCTGTAATACACCTGAGGAGAGAGGAGGAACCAGATCAACAGTCTCTTATGTCAAGCTGACAGCTTCAAGGAAGAGAATGATTCATACAGGAAATGCTGAGAAcagctttaaaatgtcacttcaGGACAGAAGATGACTAATAAAATGCTCCAGTTTTCTTAAAA
>TCONS_00008038
AAGAGTGGACAGATAACACATGCAATGCTGTTTCTAAACTGAAAGCTTTTTATCCAAAAGGATTTTTGTCAACAACCTCACTTTCAGGAAACATCAGCAAGAATGTTGGATGTATTAATAATTGGAGGAGGTCCTCATGCTTTAACCCTTGCTACATTGCTCTCAAACCCTGACAAACCTCTCTGCCAAACTAGCATCCTTCAAGGAATTCAACTCAGCAAAACCAGAACTAAAAGTGTAAACcacaaaaacaaaaagagcaCCTCCAAGCCAGTGTCTGGAACAGAGAATGAGACCAAATGTCTGCCATGTCCTCCAATACACTTCAAAGTGGTGGATTCTTATGGAAAATGGACAATTCTTTGGGAAAGTCAGTTTACTGCCCTGAACATCCCTCACCTTCGATCACACATGTTGGTACACACAGATCCATTTAACAAGAAAGCCTTGCAGGACTTTGTGTTGGAGCAAAATCGGGAGGCGGAACTGCACAGTCTACCTGAGCAAATGTACATTCAGGACGAGCATGCCTTTTTTAATGACAATCGCCTGGGAAAGAAAGACAAAAAGCTGCTTAGCACAACAAAAGGCCTGCAGAAAAACCTGTATTTCAGTCTTCCAGGAACACAGCTCAGTATTGACTTCTTCCAGGAGCAGGTTCGCAAATATGACCTGGAGAGTGTCTTAATCAAAGCCACGGTGGACAGAATCATCCCAGTCTTAACTGAGGACGAGAGCAATGTGAAGTTTTTCAAGGTGACGCTACACACTGGGGAAATTATAGAGGCGAAATCAGTGATCATGGCGACGGGGCCCTCAAGGGCGCAGATGGCAAACATCCCATGCTGGGTGCAGGCAATCCAGGAGAACTACCCAGAGGAAAGTCTGCGACACACCGTGCAGCTCATGCATAACTTCTGTACACATGAAGAGCAGGGTGAACATTCTTCAGGTTCTCCAACTGTGTGTCAGATGGGTCAGAGAGTTATGGTGGTAGGTGGAGGTTTGACCAGCGCCCATGTTATTTCCATTGCACTGAAACAGGGTGCATGTCATGTGACCTGGGTCTTACGTAAACACTTACAGCTGAAGCAGTTTGACGTTGGGGATGTTGAGAGTCTTATTGGACGCTATTCACATGTTGAGCATGGGATCAAATTAGATGGCCTGGCCTACTTAAAGCAGTTCTATAATGAAAGAAGTCTTTATAAAAGACTAGTAATGATAAAACAAGCCAGGAAAGGAGGAGCAGTGACCCCTGAGGCCTATGCACAACTTCAGCCTTTTATTCAGAGCGGAAAGCTGCTCATCAGAGCTCACTGTCAGGTGACCAAAGCTAAATGGTGTTATGAGTCTCAGCAATGGAGGGTCTCCTTGTGCAGTGGCGAACAATGGAGAGGAGAACAGATTTGGCTGGCAACTGGCTGCAAACTGGATGTCACTCAGGACCCTTTACTCTCTGATGTCAAGAGACAATTCCCCATTCATgtcctggagggctggcCATGCATAACAGAATCTCTGAAGTGGACAGCAGGATGCCCTCTCTATCTGATGGGACAATATGCAGCACTTCAGGTTGGGCCACATGCTGTGAACCTTGCAGGGGGTCAAGCTGCAAGTATACGGATTTTCAAAGACCTCATAGCTCAAAACAGTGGACTAGAGGAGAGTAAAAAAGCATGCATGGAGAAGACCTGCACTGAAGAGTACATTTCACACATGCATGGTCTCATGTGGCTGTAATACACCTGAGGAGAGAGGAGGAACCAGATCAACAGTCTCTTATGTCAAGCTGACAGCTTCAAGGAAGAGAATGATTCATACAGGAAATGCTGAGAAcagctttaaaatgtcacttcaGGACAGAAGATGACTAATAAAATGCTCCAGTTTTCT
>TCONS_00008039
GAATTCAACTCAGCAAAACCAGAACTAAAAGTGTAAACcacaaaaacaaaaagagcaCCTCCAAGCCAGTGTCTGGAACAGAGAATGAGACCAAATGTCTGCCATGTCCTCCAATACACTTCAAAGTGGTGGATTCTTATGGAAAATGGACAATTCTTTGGGAAAGTCAGTTTACTGCCCTGAACATCCCTCACCTTCGATCACACATGTTGGTACACACAGATCCATTTAACAAGAAAGCCTTGCAGGACTTTGTGTTGGAGCAAAATCGGGAGGCGGAACTGCACAGTCTACCTGAGCAAATGTACATTCAGGACGAGCATGCCTTTTTTAATGACAATCGCCTGGGAAAGAAAGACAAAAAGCTGCTTAGCACAACAAAAGGCCTGCAGAAAAACCTGTATTTCAGTCTTCCAGGAACACAGCTCAGTATTGACTTCTTCCAGGAGCAGGTCTGAGCCTCACTCAGCATGAGGAATTGAAAGGAATGCCTgactaacaataattaataatacactGATTGTGAAAGATTGGCTTTAACAGCAACTCTGGTGGCAAGAAAAAGCTGCATGATACAAA

Function

symbol description
pir Predicted to enable quercetin 2,3-dioxygenase activity. Predicted to be involved in monocyte differentiation. Predicted to be active in nucleus. Is expressed in olfactory bulb; olfactory placode; paraxial mesoderm; and somite. Orthologous to human PIR (pirin).

GO:

id name namespace
GO:0030224 monocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0008127 quercetin 2,3-dioxygenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-288 Predicted to enable quercetin 2,3-dioxygenase activity. Predicted to be involved in monocyte differentiation. Predicted to be active in nucleus. Is expressed in olfactory bulb; olfactory placode; paraxial mesoderm; and somite. Orthologous to human PIR (pirin).
ZDB-GENE-050522-7 Is expressed in myotome.

Ensembl:

ensembl_id ENSDARG00000056638 ENSDARG00000056650

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008035 False 1916 mRNA 0.42 9 29917613 29936755
TCONS_00008036 False 617 lncRNA 0.39 3 29918315 29921002
TCONS_00008037 False 1699 mRNA 0.46 9 29936743 29946640
TCONS_00008038 False 1899 mRNA 0.45 10 29936748 29946927
TCONS_00008039 True 579 processed_transcript 0.42 3 29944930 29946640

Neighbor

gene id symbol gene type direction distance location
XLOC_004196 vegfd coding downstream 1006 29889828 ~ 29916607 (-)
XLOC_004195 cybb coding downstream 83915 29795155 ~ 29833698 (-)
XLOC_004194 plekha3 coding downstream 149559 29756860 ~ 29768054 (-)
XLOC_004193 NA coding downstream 180366 29734578 ~ 29737247 (-)
XLOC_004192 nr0b1 coding downstream 231760 29682909 ~ 29685853 (-)
XLOC_004198 CU652893.1 coding upstream 14187 29961114 ~ 29961901 (-)
XLOC_004199 ace2 coding upstream 34751 29981678 ~ 29996357 (-)
XLOC_004200 CR318645.1 coding upstream 154215 30101142 ~ 30101257 (-)
XLOC_004201 scml2 coding upstream 159255 30106182 ~ 30158609 (-)
XLOC_004202 cflara coding upstream 386032 30332959 ~ 30341431 (-)
XLOC_004063 CR854846.1 misc downstream 13789935 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 17225922 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 17295846 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 17326317 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17404351 12512966 ~ 12513262 (-)
XLOC_004190 NA non-coding downstream 372624 29537982 ~ 29544989 (-)
XLOC_004188 NA non-coding downstream 597694 29099927 ~ 29319919 (-)
XLOC_004187 NA non-coding downstream 828987 29085366 ~ 29088626 (-)
XLOC_004183 BX649345.1 non-coding downstream 1392117 28522364 ~ 28525496 (-)
XLOC_004211 NA non-coding upstream 1253292 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 1257998 31204925 ~ 31211308 (-)
XLOC_004216 NA non-coding upstream 2203291 32150218 ~ 32157526 (-)

Expression


Co-expression Network