RNA id: TCONS_00008039


Basic Information

Item Value
RNA id TCONS_00008039
length 579
RNA type processed_transcript
GC content 0.42
exon number 3
gene id XLOC_004197
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29917613 ~ 29946927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTCAACTCAGCAAAACCAGAACTAAAAGTGTAAACcacaaaaacaaaaagagcaCCTCCAAGCCAGTGTCTGGAACAGAGAATGAGACCAAATGTCTGCCATGTCCTCCAATACACTTCAAAGTGGTGGATTCTTATGGAAAATGGACAATTCTTTGGGAAAGTCAGTTTACTGCCCTGAACATCCCTCACCTTCGATCACACATGTTGGTACACACAGATCCATTTAACAAGAAAGCCTTGCAGGACTTTGTGTTGGAGCAAAATCGGGAGGCGGAACTGCACAGTCTACCTGAGCAAATGTACATTCAGGACGAGCATGCCTTTTTTAATGACAATCGCCTGGGAAAGAAAGACAAAAAGCTGCTTAGCACAACAAAAGGCCTGCAGAAAAACCTGTATTTCAGTCTTCCAGGAACACAGCTCAGTATTGACTTCTTCCAGGAGCAGGTCTGAGCCTCACTCAGCATGAGGAATTGAAAGGAATGCCTgactaacaataattaataatacactGATTGTGAAAGATTGGCTTTAACAGCAACTCTGGTGGCAAGAAAAAGCTGCATGATACAAA

Function

GO:

id name namespace
GO:0030224 monocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0008127 quercetin 2,3-dioxygenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-7 Is expressed in myotome.

Ensembl:

ensembl_id ENSDART00000135699

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008036 lncRNA downstream 23928 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 182919 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 207683 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008023 lncRNA downstream 287060 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008811 lncRNA downstream 399941 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008040 lncRNA upstream 14474 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008053 lncRNA upstream 414988 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008812 lncRNA upstream 1253579 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 1258285 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 2203578 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008035 mRNA downstream 8175 29917613 ~ 29936755 (-) False XLOC_004197
TCONS_00008032 mRNA downstream 28323 29889828 ~ 29916607 (-) False XLOC_004196
TCONS_00008034 mRNA downstream 28323 29909202 ~ 29916607 (-) True XLOC_004196
TCONS_00008031 mRNA downstream 111232 29818389 ~ 29833698 (-) True XLOC_004195
TCONS_00008029 mRNA downstream 126064 29796870 ~ 29818866 (-) False XLOC_004195
TCONS_00008041 mRNA upstream 35038 29981678 ~ 29996357 (-) False XLOC_004199
TCONS_00008042 mRNA upstream 35040 29981680 ~ 29996344 (-) True XLOC_004199
TCONS_00008044 mRNA upstream 159542 30106182 ~ 30138299 (-) False XLOC_004201
TCONS_00008045 mRNA upstream 159542 30106182 ~ 30158223 (-) False XLOC_004201
TCONS_00008046 mRNA upstream 160807 30107447 ~ 30158609 (-) False XLOC_004201
TCONS_00008033 other downstream 35305 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008030 other downstream 128728 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008022 other downstream 287078 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008006 other downstream 1349502 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1858006 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008043 other upstream 154502 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008048 other upstream 207178 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008052 other upstream 411469 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008056 other upstream 477586 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008067 other upstream 1223709 31170349 ~ 31172254 (-) True XLOC_004210

Expression Profile

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