Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008034 |
| length | 819 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 6 |
| gene id | XLOC_004196 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 29889828 ~ 29916607 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045766 | positive regulation of angiogenesis | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0038084 | vascular endothelial growth factor signaling pathway | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0050930 | induction of positive chemotaxis | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0048010 | vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0060754 | positive regulation of mast cell chemotaxis | biological_process |
| GO:0008015 | blood circulation | biological_process |
| GO:0001934 | positive regulation of protein phosphorylation | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0001938 | positive regulation of endothelial cell proliferation | biological_process |
| GO:0001945 | lymph vessel development | biological_process |
| GO:0001946 | lymphangiogenesis | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005172 | vascular endothelial growth factor receptor binding | molecular_function |
| GO:0043185 | vascular endothelial growth factor receptor 3 binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| GO:0042056 | chemoattractant activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070810-6 | Predicted to enable chemoattractant activity; growth factor activity; and vascular endothelial growth factor receptor 3 binding activity. Acts upstream of or within angiogenesis; blood circulation; and lymphangiogenesis. Predicted to be located in membrane. Predicted to be active in extracellular space. Is expressed in several structures, including pectoral fin; pectoral fin bud; post-vent region; spinal cord; and tail bud. Orthologous to human VEGFD (vascular endothelial growth factor D). |
| ensembl_id | ENSDART00000079152 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008027 | lncRNA | downstream | 147191 | 29760108 ~ 29762011 (-) | True | XLOC_004194 |
| TCONS_00008025 | lncRNA | downstream | 171955 | 29734578 ~ 29737247 (-) | True | XLOC_004193 |
| TCONS_00008023 | lncRNA | downstream | 251332 | 29652690 ~ 29657870 (-) | True | XLOC_004191 |
| TCONS_00008811 | lncRNA | downstream | 364213 | 29537982 ~ 29544989 (-) | True | XLOC_004190 |
| TCONS_00008810 | lncRNA | downstream | 589379 | 29279588 ~ 29319823 (-) | True | XLOC_004188 |
| TCONS_00008036 | lncRNA | upstream | 1708 | 29918315 ~ 29921002 (-) | False | XLOC_004197 |
| TCONS_00008040 | lncRNA | upstream | 44507 | 29961114 ~ 29961901 (-) | True | XLOC_004198 |
| TCONS_00008053 | lncRNA | upstream | 445021 | 30361628 ~ 30364805 (-) | True | XLOC_004204 |
| TCONS_00008812 | lncRNA | upstream | 1283612 | 31200219 ~ 31202839 (-) | True | XLOC_004211 |
| TCONS_00008813 | lncRNA | upstream | 1288318 | 31204925 ~ 31211308 (-) | True | XLOC_004212 |
| TCONS_00008031 | mRNA | downstream | 75504 | 29818389 ~ 29833698 (-) | True | XLOC_004195 |
| TCONS_00008029 | mRNA | downstream | 90336 | 29796870 ~ 29818866 (-) | False | XLOC_004195 |
| TCONS_00008028 | mRNA | downstream | 92773 | 29795155 ~ 29816429 (-) | False | XLOC_004195 |
| TCONS_00008026 | mRNA | downstream | 141148 | 29756860 ~ 29768054 (-) | False | XLOC_004194 |
| TCONS_00008024 | mRNA | downstream | 223349 | 29682909 ~ 29685853 (-) | True | XLOC_004192 |
| TCONS_00008035 | mRNA | upstream | 1006 | 29917613 ~ 29936755 (-) | False | XLOC_004197 |
| TCONS_00008037 | mRNA | upstream | 20136 | 29936743 ~ 29946640 (-) | False | XLOC_004197 |
| TCONS_00008038 | mRNA | upstream | 20141 | 29936748 ~ 29946927 (-) | False | XLOC_004197 |
| TCONS_00008041 | mRNA | upstream | 65071 | 29981678 ~ 29996357 (-) | False | XLOC_004199 |
| TCONS_00008042 | mRNA | upstream | 65073 | 29981680 ~ 29996344 (-) | True | XLOC_004199 |
| TCONS_00008030 | other | downstream | 93000 | 29809697 ~ 29816202 (-) | False | XLOC_004195 |
| TCONS_00008022 | other | downstream | 251350 | 29652690 ~ 29657852 (-) | False | XLOC_004191 |
| TCONS_00008006 | other | downstream | 1313774 | 28590888 ~ 28595428 (-) | True | XLOC_004184 |
| TCONS_00007992 | other | downstream | 1822278 | 28078148 ~ 28086924 (-) | False | XLOC_004178 |
| TCONS_00007974 | other | downstream | 2189933 | 27713464 ~ 27719269 (-) | True | XLOC_004171 |
| TCONS_00008039 | other | upstream | 28323 | 29944930 ~ 29946640 (-) | True | XLOC_004197 |
| TCONS_00008043 | other | upstream | 184535 | 30101142 ~ 30101257 (-) | True | XLOC_004200 |
| TCONS_00008048 | other | upstream | 237211 | 30153818 ~ 30155835 (-) | True | XLOC_004201 |
| TCONS_00008052 | other | upstream | 441502 | 30358109 ~ 30364824 (-) | False | XLOC_004204 |
| TCONS_00008056 | other | upstream | 507619 | 30424226 ~ 30508791 (-) | True | XLOC_004205 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000306_05606914_05611346.mRNA | True | 1023 | mRNA | 0.43 | 4 | CI01000306 | 5606605 ~ 5611346 (-) |
