RNA id: TCONS_00008811


Basic Information

Item Value
RNA id TCONS_00008811
length 2101
lncRNA type read_through
GC content 0.48
exon number 2
gene id XLOC_004190
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29537982 ~ 29544989 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttaaacattttattggaAGTCAGAAAGCAAACTCAGGAAACAGCAAACACCTAAGACTTCACTTGTTGCAACAGCCTGAACAACTTCTGCGATGAATGCCCATTTTGAGCATGTCCAGGATTATTTTGACCTGTAACCAACTTGTTTTCAACCTGTTGTGGAATTGCAAATTCAGGTTGCACTGGCTGAAACACAGACTCATGGTTTGAAACTTCTGGACCACTCAAGGCTTGGGAACTTGTAGACTGGTGACTTGATGGCACAAGCTCTGAAGTAGTTTGAAATCCAGGCTGTAAGACAGTCTCATAACTTGATTGTACaagaggctggaagctggactGCAATGGCATGCCTGAAGAAGAGCTGGACTGAGTGAGAGACAGACTACCAGGCTGCATTTGAGGCTGGGAAACAATCTGTCCTGGAACAGGGGATATCTggtattcagcaaaagagacagatTCTGAGCTTGATTGTGCCACAGGCTGGTACATGGGTTCCACTGGCAAAGCTTGAGAGTAGACAGGCAGAGATAGAGACTGATGGCTAGGATGAGCTGGTGATAAAATGGATTGGAGTGTAGATGTGTGGGGTTTGGGATGCTTAGACTTTGTAGGGGTCTGGTTGCCGGACTGTACAACAGGCTTGGTGTGCGAAGTTACAGCTGGAGACTGAAATCTCCTCTGGTAACCATGCTGAGGTAACTCTTGACATGAATAAAGACTGGAGCCAATCTGGTGAACCCTATGGGAATGCACCGGCTTGAAATGCGATTGTCCACTCTGCTCAACAACATACTCATGGGTGGAGTGTCCTGCTTGCTGGCTGATAGGTAGGGATACAGAGAAGTCAACATGCGCTGGCTGTTGAAGACCGAGCTGTGCCACCCACTGTGAGCCGGGCTGCACTGGTAGTGGCACACTGGCCTGGCTTGCAGACTGATAGCCGATTTGTGCTGGTTGAACAACAATTTGGGGCACAGTTAGGTAGCTGGTTTGTCCTGGCTTTTGGGAAGCAGACTGGGCCTCTGATTGGTAGATGGCTTGTAGTGGCAGTTGTAGACCATGTTGGGGCACAGACTGGTAGGTGGTTTGTACTGGCATTTGGCTAGTGGACTGAGCTACAAGACTTGAGCTTGGTTTATAGACAGGACTGGTACTGGATGGAGGCTTGGACCCAAACTGAGGTCTACCTTTGTGGGGCTTGAGAAGAGTCAGGCTGCTGGGCTGAGCAGTCAAGACATAACTACCGTGTAGTGGTTTCTGGTCATTTGACTGGGAAATGGATTGGCTTGTCTGAACTAGCTGTTGACTGGTGGCCTGTTCTACAGTGGCATCGACTTCCTGTTGAATCAGCTGACTGCTGGGCTGAACAGAGATGTCAACATGGGGAGGCTGCATGCCGCTTGGCTGACTTGCAGTCTGGCCACTGGACTGGCTGACAAGTTCATAGTTAGCCATAGCTAGGCTGCTTGGCATACTGCCATATAGTAATATTGGTGCAGACTCCTTTTTAGGAGTAAGGGGCTTTGAATTGAATACTGGATTTTGAACTGGCCTGGTACCAAAAACAGTATTAGAACCAGACTTGTGGGGCAGTCTATTGGCATAAACTGCAGACTGGAAGCCAGGTTGTGGAAGTTGATGGCCGCTGGTCTGGGACAACTGGAGAGAGACAGACTGGGCCATGGTTCCAGAACTTGCTGGTTGCTGACTGTTGGACTGGGGGCCAGTCTGCACTTGGGAAGTTAACAGCACAGGCTTAGGAACAGAGTAACTGCTTTGCTGCAGTGGCATCAAGACTGAAGAGCTGATGACTTCAGATTCTTGGACATCAGTTGATTGGTTCATATCATACTCAGACACGGCCAGACTTGCTTTATTTCCCACTGTACCATAAACGAGACTACCACTTCCAGCTACAACACCAGATCCTTGAAGTTGGCTTCTAGTGGAAGAATCAGAGCTTGGTTTTTCACTTGTGATGGAAACACCTGAAGAGCCAGCCAGAGAACTGTAGCTTCCGATATCATAGCCACCTTTTACTGCAGCACTATACCCAGTATAGCTGCCCATGCTTCCAGGGCTACTTGCAATAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008809 lncRNA downstream 218063 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008011 lncRNA downstream 218075 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008808 lncRNA downstream 218105 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008807 lncRNA downstream 218128 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008012 lncRNA downstream 218157 29211687 ~ 29319825 (-) False XLOC_004188
TCONS_00008023 lncRNA upstream 107701 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008025 lncRNA upstream 189589 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 215119 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 373326 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 416125 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008008 mRNA downstream 455553 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 455807 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 626810 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008007 mRNA downstream 898484 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 923374 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008018 mRNA upstream 29754 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 29754 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 29754 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008019 mRNA upstream 29933 29574922 ~ 29650930 (-) False XLOC_004191
TCONS_00008020 mRNA upstream 105022 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008006 other downstream 942554 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1451058 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1818713 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 2034662 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 2034850 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 107701 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 264708 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 351383 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 399941 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 556153 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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