RNA id: TCONS_00008009


Basic Information

Item Value
RNA id TCONS_00008009
length 2235
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_004186
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28642913 ~ 29082429 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAACGCTGGTTACAGCCTTCGCGAGGAGACTATTTCGCAATGCAACGCTTTTAATAATCTTTACGCAATCTTCACGCAATCATCTTTGCATCCGTTGAAGTGCGCATTTGTTTTAAACTTCAATCTTCCCTCCGACACACTTGGACAGCATCATGACCAGTTTGTGGGATCGCATCCCGTTGGAATGGTGGGAATTACGCGGCGAGCTGCCGGAGAGCATGTAAACGCAAATGGAGTTTGGGATTTATTGCAAAATATGGGAAAGATGACCGTCTTGTCTTTGTGTTTTCTCTTGTGCGCTGATCTACTGCAAGTAGCTGTTGGATATCTAACTGTAACGATAGAGCCATTGCTACCTGTTGTTGTGGGAGAAGCGGTGACTCTAAAGTGCAACTTCAAGACAGATGGAAGATTACGAGAGATCGTATGGTACAGGGTTACTGACGGGGGCACCATTAAGCAGAGGATTTTTACGTACGATGCTATGTTCAATACAAATTACTCTCATATGGAGGATTACCGCAGACGGGAAGACCTGGTGTATCAGTCGACGGTCCGgCTCCCAGAGGTGCGGATCTCAGACAATGGCCCTTATGAATGCCATGTAGGAATCTATGACCGAGCGACACGAGAGAAGGTCGTCCTGGCATCAGGGAACGTCCTGCTTACGGTCATGTCTCCACCAAACAATATCTCAGTGCTGGCAGAAAACACTCCAGCGCCGTTTAGTCGATATCAGGCCCAAAACCTCACTCTGATCTGCACTGCCAAAGGAGGAAAACCAGCTCCATCGGTGTACTTCAAGCGGGATGGAGAATTAATAGAAGTGATCTCCTACGTTTCACCCACCGTGGGATATGAAGGTGCCGGCTCAGCTGGAGTGCGAGGAGCAAGACCTCTGATCAGCAGAGATCTGGACGACACTAAGCTGAGGAAGTCTCTATCTCTGTTAGGTCCGGAGGGCAGGCCCGGACGCCTCAACACGGAGAGCCCGGGACGGAGCTATATGGCCAGACAACCCGGCCAAGAGCCCAGTCCAGCCACGGAGACCATCCCAGAGACAGTGGTCAGCCGTGAGTTTCCACGCTGGGTACAGAGCACAGACCCCCTGTACTTCTTCAGCAACATACACATCCCTCAGAGCGATGGGACAGTGCTGGTCCAGGCCAAGCTCACCTGGACGCTGAATCCACAGTTGGACAATGATGCCCTGTTTAGCTGCGAGGTCACGCACCCTGCGCTCTCTATGCCTATGCAGACTGAGGTCATACTGGCGGCTCCAAAAGGCCCCAAGCTTGTGATAAGCCCTACCAGGGCAAAGGTAGGGGATACGGTTCGTATCACCGTCCAAGGTTTCCAGaacgaTGTGTTTCCTGAGCCTTTGTACACCTGGACGCGGGTGGGTGGCAGACTGCTGGACGGCAGTGCAGAGAAGGATGGGAAGGAGCTGATACTGGAGCGAGTGCCTGCTGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAAAATCCACTGGGctccactgacacacacacacgcctcatTGTTTTTGAAAACCCGAGTATGATGAAAAACACACAGAATCCAAACAaTGGAGCTTTTGGTTTGCACAAGCTTGGACTGATATGCCTGCCACTTATTCTCACAGTGACTGTTGAGCTGACGTGAATATCCTCGAttgaaccacacacaaacacacttcctctccaatcagacacacacacagacacacacaagcctTTCCAGACCGTTACTAAACCTACCTTGCTATCATCTGTGGGACATCCTGAACACCTCCCAACCCCCCAACAGGGAGCGCACCGCCCTtttttgtgaacaaaaaaaaagatccgctgattaaaaaaaataatagtaataataataatatgaaaataacatGCTGAATATGAGAACAAGCACCTCCTTATTGTCAACCCCTTTCAACAGacagtattgttttgttttttaatcattaaactTGCCTGCCAATTAAAGGAGACCTGTTTATTCAGAAAAGCAAACAGTGTTTGGGCATCGAGCTGGACTAAAACGTCGAGCGCTGGGTATTGGAGAACAGACTTTAAGGAACTGTGGCTCGCTGACAATGCAGACTTTCGTTTCAACTCCGACTAGCTATCCTGGAATTCCCTTATACCGCACACTGGCACAACAGGACTCAAATGCGCCCCTTTTTTAAAGAACATGTTTTACGCCATTTGTGTTTTTTGATCA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-118 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction. Is expressed in brain; pectoral fin musculature; and retina. Orthologous to human IGSF21 (immunoglobin superfamily member 21).

Ensembl:

ensembl_id ENSDART00000123245

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007999 lncRNA downstream 118111 28522688 ~ 28525496 (-) False XLOC_004183
TCONS_00007997 lncRNA downstream 118113 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA downstream 118454 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00008003 lncRNA downstream 118480 28522933 ~ 28525127 (-) False XLOC_004183
TCONS_00008002 lncRNA downstream 118485 28522886 ~ 28525122 (-) False XLOC_004183
TCONS_00008806 lncRNA upstream 3191 29085366 ~ 29088626 (-) True XLOC_004187
TCONS_00008807 lncRNA upstream 17752 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008808 lncRNA upstream 17752 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008011 lncRNA upstream 41422 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008809 lncRNA upstream 114127 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008007 mRNA downstream 4109 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 28999 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00007996 mRNA downstream 486478 28127836 ~ 28157129 (-) True XLOC_004179
TCONS_00007995 mRNA downstream 495574 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007991 mRNA downstream 556692 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00008014 mRNA upstream 248967 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008015 mRNA upstream 253125 29335300 ~ 29540464 (-) True XLOC_004189
TCONS_00008018 mRNA upstream 492568 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 492568 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 492568 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008006 other downstream 48179 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 556683 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 924338 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1140287 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1140475 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 570515 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 727522 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 814197 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 862755 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 1018967 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04883506_04908414.mRNA True 2910 mRNA 0.45 10 CI01000306 4883403 ~ 4909520 (-)