RNA id: TCONS_00008808


Basic Information

Item Value
RNA id TCONS_00008808
length 867
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_004188
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29099927 ~ 29319919 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATTTCGACGCCCGGTTGTGTCCCGTCAATCGTCAAAATGGCTGCTGCGGTATGGCGCTCGAGTTGGCTGGCCGACAGACAAGCATACGGAAGACCTACCTGTCGCCGACGAACCTAAGTACATTTGTAGTTTAggtctataaataattctaaacAAGTGAATTGTTTTaagtttatgtgtttgtgtttgatgtAATACTGTCAGGAAATGAAATGGAGTGGATATGTTTGCTTGTATGGGAAACCTGCAGTATGCTAATGGTTTGCATGTGGACCCACATCACCTCAGCTGGGATTACAGCTGAATGAGGTCATTGCTTCATGGGACGCTAGTCATGTCACCCTCAATAGAAAAACAACCACACAAGGACATCAAAACATGCAAAACACAAGGAGGCCCATAAATCCTGCTGAAAGCTGGGAACATTTCCATTCTCCTCGACCGCTCTTGCTCGAATGTTGCAGGAATCCAactcgaaccttgTCGcctggtcaacttctctctgcctCTCAAATCCgctgacgtacatggtgagccactggacaaactgaaaACAGCAGGAGAgctgtccacacggagattacatcTGTCTGAGGTTTTGAGAGTGGTTAAGATACTATACCACACCCCGTCAACtgtccaactgtcagttttgacagagctatgacaacaaacagaaactGCTTGTTTTCTAGAAGACACGTTCTGCTTGACTGATGCTGTGACAGCCCTTGTTTGCAAGCAAAGGAAGTTCACAAGGTGTCCTGTGAGGGAATGAGGGAATCCTTAAGCAAGTTCTTCCACACTTGGATGATCCTGCTTCTGCTGATGAGGTCTGGGCTGCAGTTGCGTGAGGCTCTGGTT

Function

GO:

id name namespace
GO:0042448 progesterone metabolic process biological_process
GO:0004508 steroid 17-alpha-monooxygenase activity molecular_function
GO:0047442 17-alpha-hydroxyprogesterone aldolase activity molecular_function
GO:0016832 aldehyde-lyase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008806 lncRNA downstream 11301 29085366 ~ 29088626 (-) True XLOC_004187
TCONS_00008003 lncRNA downstream 574800 28522933 ~ 28525127 (-) False XLOC_004183
TCONS_00008002 lncRNA downstream 574805 28522886 ~ 28525122 (-) False XLOC_004183
TCONS_00008004 lncRNA downstream 575139 28523945 ~ 28524788 (-) True XLOC_004183
TCONS_00008001 lncRNA downstream 575231 28522881 ~ 28524696 (-) False XLOC_004183
TCONS_00008811 lncRNA upstream 218105 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008023 lncRNA upstream 332813 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008025 lncRNA upstream 414701 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 440231 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 598438 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008008 mRNA downstream 17498 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 17752 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 188755 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008007 mRNA downstream 460429 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 485319 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008014 mRNA upstream 11265 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008015 mRNA upstream 15423 29335300 ~ 29540464 (-) True XLOC_004189
TCONS_00008018 mRNA upstream 254866 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 254866 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 254866 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008006 other downstream 504499 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1013003 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1380658 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1596607 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1596795 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 332813 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 489820 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 576495 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 625053 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 781265 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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