RNA id: TCONS_00008005


Basic Information

Item Value
RNA id TCONS_00008005
length 1652
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_004184
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28590733 ~ 28614608 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGCAATACTTCTGTCAGTCCTCCAGCTGTCAATCAAGATAAATAGTCTCTTAAAAACCCCTATCAGACCCGAGGTATCGTCATAGTTGGACTCTGGCCGCTGTCAGTAGCGACAGGACTCAGTCTCCGGTGCAAAACAGCAGCGCACACTTGTCGCAGCAAGAGCTCCGTGGATAAAGAGTTTATGTCGGAATAAAGGTGCGCAAAATGACAGATATTCCTCAGAGGCGCACATGAACTGCCTTGGACCGCGTTTCACTCTATTAAGAGTGAGTCAGCTCTGCAAAATAAGGCGAATTGCCTTATTCACTCATTTAAATAGGAGTAAAGGTGATCGCTCCGAGCAAGGATTCAATTAGTTCGGCAATTGTTCCAGGCGAGAACTGAGATAAGCGGACACTGAGACGGAGTGAAATGGATCTGAAGGCGCTGGGCTGCGTGGTGCTCTTACCTATTCagatactatactatactgtcaAGGCGACCGTGTGCTGGTTCCTACCGAGCAGGCGGAGAGATCTGACCGGAGATGTAGTGCTTATCACGGGTGGCGGACGGGGCATTGGCCGTCACCTGGCTAAGGAGTTCGCCGTGCGTGGAGCTAAAAAGCTAATTCTGTGGGGCCGGACGGAAAAATGTCTGAAGGAGACTTGTGAGGAGATCACCCTCATGGGGACAGAGTGCCATTATTTCGTTTGCGATGTGGCCAACAGGGAAGAAGTCTACAAGCAAGCCAAGGTTGTCAGAGAAAAGGTGGGAGATGTGACCATTCTGGTTAATAATGCTGCAGTGGTGCATGGCAAGAGTTTGCTGGACAGTGATGATGATGCTCTTCTCAAGTCGCAACACATCAATACAATGGGACAGTTTTGGACCACGAAAGCCTTCCTGCCTCGTATGCTGGAACTCCAAAATGGCCATGTTGTGTGTGTCAACTCCATCCTGTCACTGTCCCCCATCCCCGGTGCTATAGATTACTGTACATCTAAAGCTTCTTCACTGGCCTTCATGGAGAGCTTGACTCTGGGGCTGCTGGACTGTCCAGGTGTGGCCTGCACCACCGTCCTCCCGTTCCACACCAACACTGAAATGTTTCAGGGCATGAGAGTGAGgtTTCCGCAACTTTTTCCTCCTCTAAAGCCAGAGGTTGTAGCACAGAGAACAGTGGATGCTGTTCGGACAAATACAGCCTTTGTTTACTTACCCTGGACCATGAACGCACTCGTTATCCTCAAAAGCATGCTACCACAGAGTGCACTGGAGGAAATCCACAGATTCTCAGGAACCTACACCTGCATGAATACATTCAAGGGGCGGACATGAGAGATTTAGGAATAACACAGGAGTTTCAAGTGTTACATAAttttaaacaaactgttttttattaaacaaaggcTCTGGAGTTGTTCTTTCACGAGCATTGAGttagaagaaaaaaagacagagaGCCAGAACGCATTTCCAGGACTGTTTGCAGGTCAGCACTGACCTTTGTGTTGCGTTGTTGGACAAACAcagaatggaagaaaaaaaagaagcctCAGTTGATCgctgtgctgtactgtatgtgtactttaatgttttttaacaatCACCTTTTAACTACTGTCACTGTAAATTCTGCAtctgaataaaaaagaaaaaaaaaga

Function

GO:

id name namespace
GO:0001523 retinoid metabolic process biological_process
GO:0042572 retinol metabolic process biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0005811 lipid droplet cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0004745 retinol dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-172 Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within retinol metabolic process. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; margin; myotome; nervous system; and ventral mesoderm. Orthologous to human DHRS3 (dehydrogenase/reductase 3).

Ensembl:

ensembl_id ENSDART00000065853

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007999 lncRNA downstream 65237 28522688 ~ 28525496 (-) False XLOC_004183
TCONS_00007997 lncRNA downstream 65239 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA downstream 65580 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00008003 lncRNA downstream 65606 28522933 ~ 28525127 (-) False XLOC_004183
TCONS_00008002 lncRNA downstream 65611 28522886 ~ 28525122 (-) False XLOC_004183
TCONS_00008806 lncRNA upstream 470758 29085366 ~ 29088626 (-) True XLOC_004187
TCONS_00008807 lncRNA upstream 485319 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008808 lncRNA upstream 485319 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008011 lncRNA upstream 508989 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008809 lncRNA upstream 581694 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00007996 mRNA downstream 433604 28127836 ~ 28157129 (-) True XLOC_004179
TCONS_00007995 mRNA downstream 442700 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007991 mRNA downstream 503818 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007988 mRNA downstream 540174 27919702 ~ 28050559 (-) False XLOC_004177
TCONS_00007990 mRNA downstream 627976 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00008007 mRNA upstream 19109 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008008 mRNA upstream 28305 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA upstream 28999 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA upstream 70060 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008014 mRNA upstream 716534 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00007992 other downstream 503809 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 871464 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1087413 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1087601 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1842304 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00008022 other upstream 1038082 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1195089 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 1281764 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 1330322 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 1486534 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04848327_04856522.mRNA True 906 mRNA 0.51 6 CI01000306 4848327 ~ 4856522 (-)