RNA id: TCONS_00007996


Basic Information

Item Value
RNA id TCONS_00007996
length 2358
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_004179
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28127199 ~ 28390101 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGACAGATGTTGCAGATGGCAGATAATCCAGAATCTTGGGTCTGATGCAAGCTGGATTTACCCATGGCCATGATACCAACATCTGTCGTGACTTCACAGTAAGCTACCCGAACACGAAAGAGCGTGCAGTGTGTGAATACTCTTTCAACCATCAACGAAGAAAAGCGTTCCTAAACCAAACTAACAGAGTAAATATGGGAGCGAAGGGAAGCAAGGTGGTCCTGAGGGAGACGTCTGTGGATGGAGTCCAGCCTCAGCCTGCACCAGCACTTGCCTTAGACGGGTTAACCAAGACCAGCAAGATGAAGGTGAAATGGACCCAACTGGGCCTGGTGTTTTTCTTGCTGCTGTCAATCATCATGACCGCTTGCTTCATTTGGCAGTACACGCTTCCCAAGTTAGTGCAAGATGATAATGCAGATGAAAGATCCAAAGCTGTGAGAATGTGCCCTCGCTTCCCGGAGCCAACACCTCTGGAGCATCCCATCCCCACTTTAAAGGGAGCGCTTGAAAAGGTTGACGCACTACTGCGCAATAACATCAACCTTATCAGTCTGCCCTCATTGTCTGCTATTGTTACCTATAATGACACAGTGCTGTGGACAGGGAACTTTGGCAGGAGAAATGGCAGCGATCCTACTTCTGCACCACCGAATGAATACACCATTTACAGGATTGCCAGTGTATCCAAGATATTTCCCACCCTGATGCTGTATCGATTATGGGAAGATGGCAAGGTGGGCTCCCTGGATGACCCGCTGGAAAAATATGTGGACAACTTCACCATTAAAAACCCCCTGGGTAAAAGCAGAGACTCTGAGCTCAAATACGTCACAGATGGGCTGATCTTCCTTGACAGCGGTGAGGTCCAAATCCGATCCTCCTCAGTAACATTAAGAAGAATGGCCAGCCAGCTTTCTGGTCTACCTCGAAGACTCCGTGGGACTAACTTACTGTGGAAAGGCAAGACCAAGACTGCAATCAACCTCCTACAAGATGATGTGCTCGTAGCAGATCCGGGGACCAAGTGCCACTACAGCAATCTGGCCTTCTCTTTGCTTGCCCATATCCTTTCTGAGAGGGTTGCAGGTGTCAATTACCAGAGATGGGTCACAGATAACATTCTCAGCAGGTTGGGAATGGAGGACACTGGGTTTGACATTAACCCTGGCATCCAAAGTCAAATGGCTGTAGGTGTGTACGCCAGTGGCCAACCGGCGCCCCTTTATGATTTGGGCTGGTATCGCCCGTCAGGACAGATGTATTCGACTGCTGCTGACTTGGCAAAATTATCAATGATGTTATTGGGAGCGTATCATCGCAAAATATTGGAACCCGACACGTTGAAAATCATGCTAACCCCTGTGTTTCGCTGTGACAAAGACTACTTCGCCAATCGCACAGGTACACCATGGGAGGTCAACGAACAGAAGGGATATGAGGTACTACGTAAAGATGGCGATCTGGATGGCTACTCCGCTACATTCTCTCTGGTGCCTCGGCTTAAGCTTGGATTGGTTGTGTTAATGGCAGGAACGCGGCCGCAGAACCAGGATATTATTTCGAAGGCTTATTCTTACATCATTCCTGCAATGGAGAAGGCGTTTAGGGAGGCCAAGCGGTATCTTACTCCTCCTCCAGATCCTGCACCCTATGTGGGATTTTACACTTACGGCAACATCACGTTTTATGAGATTAAAGCAGGGCCAGATGGTGTCTTGATCATGCAGCAGTTTGGACCTCAAATTGAGGATCTCATCCCGGAGCGTTACCGGACCATAAAATTGAATTACCTAGTGGAACGGGTATTTAGAGTCGTTTTCGAGAAGGAGTATCCCTGCGTTTTACGTGTCAACACTGCATCTGTATCCCTCGAAGCCCAAGATGGGCAGCTTTTTAACTTTTACGTCTTTGATAAGAAAGGTGTATCTCCAGGATTTGATGCTCCAGGGCTCAACACATATAATGTGATTAGAATATCCCGCAAACCCACCTTCTCTAATTGAGGATGATACAGTTTATTTATGAAAGAACTTTATCTTGGAGAGAAAGTGATAACAGATGATGTTTACCACATTGTTTTCCCGAAAAATAGCTTGTTTACCCTGTGAGGATCTCGGAATAACctatttttgcacatttatgtCCATAAAGATTTCGATGTTCTTCCTATGTATGCATACATGTATAAAAAACATATTGAATGTTGTATTCGTATGAATCTAACACTATGAATGATTTTTTGAAGCAATATGTCATTATTAACACAACAGGCTCTTTATGGAGGCCCAGTTAAGTTTATTGGACATACTTCACAatagttaatgtgtttactaacataaactaaaaataaac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LACTBL1 (lactamase beta like 1).

Ensembl:

ensembl_id ENSDART00000103450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007994 lncRNA downstream 48132 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00007993 lncRNA downstream 48145 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007985 lncRNA downstream 297501 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00008474 lncRNA downstream 318121 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007976 lncRNA downstream 321069 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008803 lncRNA upstream 39828 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00008804 lncRNA upstream 261747 28418876 ~ 28424141 (-) True XLOC_004181
TCONS_00008805 lncRNA upstream 356613 28513742 ~ 28522344 (-) True XLOC_004182
TCONS_00007997 lncRNA upstream 365235 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA upstream 365425 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00007991 mRNA downstream 40921 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007988 mRNA downstream 77277 27919702 ~ 28050559 (-) False XLOC_004177
TCONS_00007990 mRNA downstream 165079 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00007989 mRNA downstream 174701 27920588 ~ 27953135 (-) False XLOC_004177
TCONS_00007987 mRNA downstream 253720 27872743 ~ 27874116 (-) True XLOC_004176
TCONS_00008005 mRNA upstream 433604 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008007 mRNA upstream 476588 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008008 mRNA upstream 485784 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA upstream 486478 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA upstream 527539 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00007992 other downstream 40912 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 408567 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 624516 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 624704 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1379407 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00008006 other upstream 433759 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1495561 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1652568 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 1739243 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 1787801 29944930 ~ 29946640 (-) True XLOC_004197

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_04577230_04587283.mRNA True 3385 mRNA 0.39 6 CI01000306 4576693 ~ 4588427 (-)