RNA id: TCONS_00008804


Basic Information

Item Value
RNA id TCONS_00008804
length 3867
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_004181
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28418876 ~ 28424141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TgggctttttttttctcatttttagaaaataaaccAATAACAATATTACAAATAATGAAATTGTTACATCATTCACAGGGTTACagtcaaatgtacattttatacaGCGAAACAGGACCTCCCATCTCCGTCACAGTGGTCCAGGTGGGCAGTGCTCTATTtgggcaagagagagagagagagagagagaggtctgcTGCCCTGTAATGAAAAGCAGGGCTGAGAGACATGCGGAAGAACACACTACTGCCTTCCTAACAGCAGAGGGAGCTGCGGCCCTACAGCCACTACAGCTCTGCTCGGGGAGCCATTTTCTCTCCCAACAACTTCCCACCATATTTGGAGGATGCAGGCAGAAATATGGACCAATGAGAGGGAGCCAGAGCCAGCTTGTATTTACGTTCACAGTCACACATAATCATCATAATAACGGTTTTGCATTGGTATTATGCTTCGGCGGTAGCTGCGAGCATATGCTGTTCACAGCTTGCTGTCACCCAGCTTTCAACAAAATGCTTTAAATGGTGCACGGTCACGTTTTTGCTCGCCAGAAAGAACATTTGCAGTTCGCATGTCCACATAACGGCAGCTTATTGGTCATTTTCACAAGAAATAGAAATTCCTATGTGCCATCTTTCCCAGCACTGTGTTGTGGTAGAAAGCTTGCATTTAAGGTGGTAATCCATGTGAAAAAAATAACAGAAGTGCTTAAATCACTCAGCGTGACATTCTTTCACACTCTCAAGGCCACGTCTCATTTGTCTGTGGTCTACGAAGTGTTCTGTTAAACGACAAATGAGAGACAGAGGCGTATGAGGTAATTAGTCCCCTACTGAGAAACAAACTTGAACGGTgggaaaaaaaagtgaattaCATTAGATGAATCAGATGAAATAGTCCAATATAAATACAGCTTTAATGTGTAGCAAATGTCAAGCGTGTCAGAATCTTTCAACGTATCAATATCTTAAAACAGAAAGGCTCATTGGCTGCTAATGTTCCTTTGGATCTCTCGATGCAAAGTACCAGAAAGTCGGTGCCAAACAGCGAGAGAAAAAcctctttttatttttctgaaatgaCACATTTCACTGGAAGGAAAAGAAGTCGGGGATCAGGGATACAGGATATCCCTTCAGCACTGGATTTCATTCAAAGCTCTGTTAATCCTGAACTTTTAGGCAGATTTAAAGCATGCCATAACTTGTGGGTAGTACCTCTAAATATTGCTACTGCCAtgaatttatttgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtggatcccGCAGTTTTCGGTGACAACGATTGTCCTAGGAGGGTGAAGGAGAAAGCGGTGTTATTCTGAGGAAGACGAGGGATTCAAGACCTTAGTCTCACAGTGCAGCAGTGACACTGAGACGCCATTAAATATTGAGAGGATGTGTGCTGGACAGACAGGAAGGTAAACATTGGTGTCTCTCAAGCCTTTTGAATTGATCTCTACCCGGGATGGCCTGTCTGCTGGATGCCCAAACACTGCCTGATAATagtcttttttttctaatggaaGCATCATGTAATGGGAAGAACAGAGAAACGGTCAACACCATCTGATCAGAACTTTATCAGCACTTTGAGATTCAGAATTTAGCTATACTGAACCGACCTCACAGTACTGTGTTTTTAACAGATGCATGTCAACACTGAGGTTATGGAAATAAAGCGAGAGCCCCTCGTCGACCGAGCGACAAGTATATTGTTATCCACAGTGACTGTAATGCTGGTACACGGATGTACCTGCATGTGCAAACACACTcagaaacacacgcacacatacactccAGCATGGATGAAGATGCCTCCGGCCTGTTCATCTCTACAGCTGCTTCATCTCTCAGCCCGTCCTAGTACAAAACGAAAAGCCCAAAATAAACAGACAATAGCAACTCTCCATcaacaacacattaaaaaaaaaactaatctgtaCACTAAAATCCAACACAGCTTTGAGAAAAACCTCTCAGGCGGGGGGAGTTTCTGATTcagaatattatatacagttttaCGTCAATGCAGGTGAAGTATCTTACGCAATTACGAATGCTTTCTCTGTATAAAATaaaacctatacacactcatttacattttGTGATTCGTTAACGAAACTCCAGCTTGTTTTTTAGATGTCAGATTTAATCTTGACCCCCCGATCGGTGAATGTAACCTGTTTAAAAATGTCGTAACAGCATCCTTATATAAAACTATGCTTCACAATGACTTTCCTGTTATGAAAATGTCCTCTAACTCTTTATCAGATATTAAAACTCCTAAACACCATATTACAAAACGTTGATCTTTTAAAAGAAATGATTTTGGTGGCAAAAATATAAGCATATCGACACAGTGATCTGCGACGTGTATCAAATCCAAGCATCCCCTGAAATCATAGTTTTGCACCGCACATGGGCTCCatacgcacacatgcacacactcgcAAGGCAGGGATTCGAGCATAAAAGAAGAGCGGAGATGTGAGGACCACACCATACGTGCACTCGGGGTCCTTCTCTGGTTCACCAAAAGAGCGAGCTAAAAAGTTTTCTTTATGGGGGAGAACATCTTACGCCGTCTTTCAAACTAAATCATCTTAGCCCATGACAAAAAAAGGAAGAAGAATATAAAAGATGACCCCCTCGAGTCACAAACGTTTGCGCACTCTAAAGAAAGTCCATCAAATGTCAATGTAGCTCAATCTAATACTCAAAATGAAGCTAAATGTTGGACTGCATCAGGCTTGTACTGATGACCTCACGACGTCAAGTGCATCTGATATGTACAGGACGAGGTACAAAGAGATGATGCTCAATTTTGGCAGGCTGTTTTATGACATCTGTAAAAGATTTCTGTTTTCCTCCCCCCGAGCAATGAGAAATCTGCACCACAAATTGCAACACTGTGATAACTGCATTTTTTTTCCTTcctctgtttgtttgtgttgatGTAGTTTGAATGACTGAAGTCTCATGTTTTCTTCAAGGCAGAATCAGCTGCCAGAAGGAAGTGCCATTTCATGGTGTTCACATACTTTTCCCCTGACTGTCAGCAAGGGGAGAGGGATTACGGTCCCGCAGGTTgtcccatgtgtgtgtgtgtgtgtgtatccactGAGCAGACAGTCATTATTTCTAGTCAGGATTTTCCTAAAATATTCAAAAAGAAAATCTCAGAAGCATGTATCATGGGgtgaagtttgtttttttatctccTGTTTCTTCATTGCCCTTTTAAAGGGTAGCCTTTTAATTCAGTCCACCGTATTCAGTCTGCAATCTATACATTTCATATAGATTCCTTATGTTTTCATAGCTTTAAAAATTCTTtacaaaaaaactctttaaaaaaatgaagacgATAAAAAAAGAATAACTGGAAAGGAACAAAATGAGAAGGAAATAGGGGCGGGGCCTATTGCTGGCAGACTGAAGGGTCATCCTGTGATTGGTGGTGGCTAAAACTAAACGATCAGGTGTTGTGACCATATTTTCCAGACGCAGCTTTCCCCGAATCCAGCCCATTAGGGTGTCTGGGGGTTAATGGGGGAGTCAGATGACACAGATGGAGAACGAgagtgtttgggaggagggggcaGGTGGGTATCCTAGGTGGTCCAGAAGGAAAATCAGGCTTAGGGGTCTGCGGTGGCCGCCCCATCCCTTCACGCTGGCTCTCCGCCTCCTCCTGTTGTCCTCCGCCCAGTCTAATCGAGGGCACGTGGTCAAACCTCTACCGACTGGATCTGGTTCATCTGAGCCCTCATCATCTGAACGCTGTTGAGGATCTTCTTCTGATGACCTGCTAGTGTCACTCCGACCCGGAGAATGTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008802 lncRNA downstream 28775 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA downstream 218372 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00007994 lncRNA downstream 339172 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00007993 lncRNA downstream 339185 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007985 lncRNA downstream 588541 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00008805 lncRNA upstream 89601 28513742 ~ 28522344 (-) True XLOC_004182
TCONS_00007997 lncRNA upstream 98223 28522364 ~ 28525494 (-) False XLOC_004183
TCONS_00007998 lncRNA upstream 98413 28522554 ~ 28525153 (-) False XLOC_004183
TCONS_00007999 lncRNA upstream 98547 28522688 ~ 28525496 (-) False XLOC_004183
TCONS_00008000 lncRNA upstream 98601 28522742 ~ 28524723 (-) False XLOC_004183
TCONS_00007996 mRNA downstream 261747 28127836 ~ 28157129 (-) True XLOC_004179
TCONS_00007995 mRNA downstream 270843 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007991 mRNA downstream 331961 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007990 mRNA downstream 456119 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00007989 mRNA downstream 465741 27920588 ~ 27953135 (-) False XLOC_004177
TCONS_00008005 mRNA upstream 166592 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008007 mRNA upstream 209576 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008008 mRNA upstream 218772 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA upstream 219466 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA upstream 260527 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00007992 other downstream 331952 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 699607 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 915556 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 915744 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1670447 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00008006 other upstream 166747 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1228549 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1385556 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 1472231 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 1520789 29944930 ~ 29946640 (-) True XLOC_004197

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU497517 True 5011 lncRNA 0.39 2 CI01000306 4753007 ~ 4758402 (-)