RNA id: TCONS_00008014


Basic Information

Item Value
RNA id TCONS_00008014
length 8423
RNA type mRNA
GC content 0.42
exon number 27
gene id XLOC_004189
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29331142 ~ 29563437 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAGCAGGGGAGGAAAAGAGCGAGGGAAAAGAAAGGAGTGACAGAGGCACATTCAGCCTACGAGAGCAAGGAGGAGTGGAGCTGTCGGTGCATGGAGTAGGGAACTTGCTGCCTGTGGGAAAGTAAACAGCACAGGCTATTTGCCGCCCTCTCAGGGGCCTCAGTCCGGCAGCAGTGGCTAAGCGAGGGATGAGGATGTGTTCAAAGAGGCTGCTGATTTCATAGCAGGAAGTGCATGGGAGGCTGTTGGGATTAAAGTCCCTCTTGGGAGGTACTGAGGCTTTCCTGTGAAAGTACTACTGAGGACAAAAAGAACCTATGTCCACAGTTTCATCTCAGCAGCTGGCGGAGGATGTGGAGGACAACGAGCAGAGGAAGGGATTCAGATGTAAAGATGAGATTAGCAAAGAAGAGAGCAGGACTCCATCTGGAGACAATACAAGCAAATACAGTGAACTCCAGATACTTTCAAGTGCACTAGAAGCAACGCAGAAAAAACAATCAGATCTATTCCAAGACGCCAGTACAAGTTCCCCTGCTGGGTGTACCAATACTCACAGTGAAAAACCCATGTCCACAGCTTCATCTCATCAGCAGCTGGGGGAGAAAGTGGAGGATAAAGAGCAGAGAGAGAAATCCAGATGTAAAGATGAAATCAGCAAGACTGACGCTGGAGATGAGACCAGCACTTGTACAGTCTGGACCTGCTCAAGTGACTTAGAATCAACTCCAGATAAGCAGGCAGATTATTCATCCCAAGCCACAATGACAAGTTACCCTGTGGAGTGCTCAACTATTAACAaTGCAACAGACAGTAAAAGAGATCAAGCTTCAACAGACTCTACAGCACCAGAGGATTTAAATGAAGAGGAAGACCACACTTGCACTGTGGTGAAGATCCAGAGAGATACATGCACTATTAAAACAAACGCAGGGACAGAGGATTTCAGACACAGCCCATCACAAAATGCTGAAGgaAATGTGTCTACAGAATCAGAACACCAGACGGCTGGTCCGGAGGTGATCTATGATGATGTTCCCAGTGAAGATCTGTCTTCAGGAGaagCTGACTTGATATATGAAGACGTTCAGAAAGAGGAGGGCTTGCAAGGGCCCAATAATGGCTGGAGCTCAAGTGAGTTTGAAAGCTATGATGAGCAGTCTGACTCTGAGAGGCCGCCAACCCGCAGcaagGTCCATCAGCTGATGCGGGCGGCACGCAGCGGAACGAAAGATGGCCTGGAGAAGACCAAAATCGCTGTGATGAGGAGAGTTTCATTCCTACATAAAAAGGACCACTCAGATGACACCGAGGATGATACAGGGTATCTGGATGTGATGGTATCTGAAGCAAAACACCCACCTGCACAACTGGGACCAATGCCAGATGGACTAAGCAGCCAGcagATTGTTAGACGCCATATTTTGAGCTCCATTGTGCAAAGTGAAAGAAGTTACCTGGACTCTCTTAAAAGAATCCTGCAGGAATACCAGCGACCGCTGATGGAGGCTGAGCCTCGGATTCTCAGTGTCAGGAAAATCCGGCCAATTTTTTTCCGTCTACGAGAGATCACGCAGTGTCACTCCATGTTCCAGATAGCCTTGGCATCTCGGGTGGCCGAATGGGACTCTTGTGAAAAAATTGGGGACCTGTTTGTAGCTTCATTTTCCAAGTCTATGGTGCTGGACGTTTATAGTGATTACGTCAATAACTTCACCAATGCCATGGCCCTCATTAAGAAAGCCTGCTTGTCTAAACCAGCATTTCTGGAGTTCCTCAAGAGGAAGCAGGCATCGAGCGTTGATCGCATAACCCTTTATGGTCTGATGGTGAAGCCTATTCAGCGCTTTCCACAGTTCATTCTCCTCTTGCAGGACATGCTGAAGAACACTCCCACTGGCCATGTGGACAGACTGCCCTTGCAACTGGCTCTGACTGAATTGGAGACCCTCGCTGAGAAACTCAATGAGCAGAAAAGGGTGGCTGATCAGATCACTGAGACACAGCAGCTGGCCCGCTGTGTCAGTGACCGTTCTCTCAGCAAGTTGCTCAACTCGGAGCAGAGCTCTTTGATCCTTTGTGAGACGCTGATTGAGACGGTGTACGGTGAACGAGGACAGGTCCTCAAGTCTAAGGAGCGGAAAGTCTTTCTCTTCGGTGACGTGCTCATCTGTGCCAACATCAATGTCAAGGGGCCCCCTGACATCAGCAGTTTGGTCCCAGTTGGTCCCAAGTACACCCTCAAATGGAGCGCCCCCTTACAGCAGGTCCAGGTAGTTGAAGTGGGTCAAGAAGCATCCCAATCCAAGGACACACTTTATCAGCTTGGAAGTGTCAAGCGTCCGGGCAGCTCTTTTGGACAAGGAAGTATCATTCTCGGGCCGCCCCGCCTGTATCACGAACTGCAGGAGCTGCAGCACGACCTCTCAGTAGTGGAGCAGGTCACTCTGCTCGTGGGAACTTTACAGGGAACGTATCAGAATCTGAACACCACAGTGGCGCAGGACTGGTGTTTGGCACTGCAAAGGCTGATCCGCATCAAAGAAGACCAAATTCAGAACGCCAACAAGTGCCGTTTACGACTGCAAGTTCCTGGCAGACCAGACAAGTCCGGGCGTCCTGTGAGCTTCACGGTGGTCTTCAACACACCGAGCCCCGTCAGCAAGATTTCCTGGGCCAACCGGTTCCACCTGGCGAAGATAGCACTGAGAGACGAAAACACACCAGGTTGGTTCTTTGCAGAGGATGATGGCAAGACAAAAGCTCCATTTTGGTGTCCACTGCTGGCCTGCCGCATGCCTGTTTTCACCTCTAAAGCCCCGGAATGGAAGCTGGAGGCTGCTCTTCATAATCCTGTTCAGTGTGCTTTACTCGGTTTCTCAGCGGCAAGCACTTCACTTCCTCAAGGCTACCTGTGGGTAGCTAGTGGAGCTGATTCCACTCAAGGCCAGGTGGACATCTTCTCCTTGAACAGACCCACACCTCGGCCTGTAAAATCCCTCCAGATGGGAGCTCAAGTGAGGTGTCTGGAGTATGTGCCTGAGCCCAGCCCATCAGAGGATGCGGAAACCAGCCTGCACAGCTCCACTGAAGTTGGAAATACTATCTGTGTAGGACTTGATGATGGCAGCATCTTGGTCTATGGCAGTATGGACTCCGCTGCCCAGTGTCTTGTGACTCTCCATAATCCTGAGGGCTGTCCAGTTTTGTGTCTCAAACATTGCAATAATGTTCTGTTTGCTGGCCTGCGGGATGGAAAGCTCATGGTGTATGAGAGACATCACAGAGGGGGACTTTGGAACCAAGACACCTCTAGAAAAGTAACAATTGGTTCACATCCCATCAGGACTCTGCTGGCTTTGGAGAACTCGGTCTGGGCTAGCTGTGCTAACACAGTTACTGTAGTCAACGGCTCCAGTTTGTCCACTCAGAGATTTGAGGTCCATCAGGACCCGATGGTGAGTGTGGCCCACATGGTGCGAGCCGGAGGTGgtgtatggatggctttttctGAAGGCTCTTCTATACGTTTGTTCCATACGGAAACACTGGAGCACCTGCAGGAGATCAACATTTCCACACCCTCGTCATTTTACAACCCCAgTCAAAAGAGCATGAGGGTCACCAGCCTGTTGATTTGCCAGGGGCTGCTGTGGGTAGGCACTGCTCAGGGTATTATCATCACCCTGCCAGTGCCTAAGCTGGAGGGCATCCCCAAAATTACAGGTAAGGGGATGATGTCCTTCAATGCTCACTGCGGGCCTGTGGATTTCTTAGTTGCCCTTTCCAGCACATTGTCCCCTGATCTTCTAAAACGGGACTCTGTGATAGAAGGTCACGATTCGGGCTGTGGAGTGGAGGACCGCAGCGACTCATCCTCTCAGGAATCCCTCCAGCAGCCCAGTGTTTCTACCCAGGTGGATGGAAAAGGGAAGGGACGGGGTGTTTTACTACAGTACCGTCTACGCTCAACCTCAGGGTTACCCGGACGGCCATTAACCGCACGAGGAGACGAAGCCTCAGACTCATCTCTAGAGTCTCTGGAGCACAGCATGGAAGATGGCTCAATTTATGAACTCAGCGATGATCCAGACATGTGGGTCCGGGGTCGACCCTGCGAGAGGGAAGGGGTGAGGCGGGACAGGGTCACCTCGGTCGCAGTCATTTCGGGAGGTAAAGGTTTCCGTCGACTAAGGGAGGGATCGGTGACAGCCACTATGGAAAGCACACTTATGATCTGGCAGCTTCCTCTCACTGTTTGAGCTGAAATTTGttgatttactcatcctcatgtcattccaatacCCTCTTGACTTCCTCTTGAATTTATACACCGGTCACTCTTTTCAGTTCAGTTATGATAAATAGACCATAATTGGGTTTAAAGCTATGTTGAATTGAATGGAGATACGAGGCTGTGAGTGATAAACTAATCGAACACAGTTATGATGGTCTTAGAGAACAGAGTATCCATAActtttactgttgttttttttttttttttttttttttggtaatcctTTTTTTGTCAGCTAGATTGCTGGTATGCTAACAAACAGCATTACAATATTTTGAAGTCACTGTAGTTTTATACCTCACAGCCTTCTCgttctcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacgtttctaagcataatagttttaaaaacctatttctaataactgatttattttatcttttacatgatgacagaaaataatattttactagatattttttaagacacttttatacagcttaaagtgacatttaaaggcttaactgggttaataaggtgaactaggcaagttatggtcccaaaaatgttttttaagaaattaaaaactgctttattctagccgaaataaaacaattaatacttttcaagaagaaaaaatattatcagacatactgtgaaaattagcttgctctgttaaacatcatttgggaaatatttaaagaaaaagaaaaaaattaaaatgggggctaaaaattctgacctcaactgtatgtatatatatatatatatatatataatgatgctACTCTTAGAAAGTTTTAGTCAAACTGATGTTATTAAGCATCATTGGCCATGTTACTCATGTTTCCTAGTTTAATAAATCaaacaacacatttttgtttaaacTGACCAAAGTGGTTACTTCATTCAAGCCCGTAGTCAGGGGGGTGGGGGTTTGGGTGGTTCCAAAGACCTGACagaggtccagaatttgtcccatacatgagctcatttgtcctattttgactgctatgccatcataaattgtaaaaaaaatacctATGATAATAGCCTATCAAAGAAGTCTTTTACGAACAAGTGAAATTCTGTCAGCAGTTGCTTCAGTGTGTCTTAGTGTTCTGAAGTGCCAAATTCAGCATCCTAAATTCTGACAGAGGAAAGGTGAATGTGCTGGCTAGTTTGGTATTTggctaataaatgacaataggctgcagtttttaatttaaaactttaactgatttctattttttattatattcgtACGttgtcatataattttttttaaaaacaagtatttttttatatttttttattttaaatttttttattttaggaaatgtttttggttcaTCAAAACGTGTTGTTATAATGACTATCCAATAAGCTGACTCAGCTAAAATTAACGCTTAAAATTGAGCTAAAATGcagaatttatatttaataatttaatagaaaatgaggcgaataactgcaaaaatgttCACTTTTAGAGAAAAAGAGTACTATTCCGTTCAGCAAACTGGCTACGAGCCTGTCATTGATAATCTTGCCAGAGCAATAAAACCGAATCACTGAATCAAGGAGTTGAACTGGTCGAAAAGATTCTAAACCAAAGAATCCATATCAATTTTTAAGCTGGTTTCACTTGTTTGATGAAAAAAtagtgtataaatataaatattgactAGTTACTATAATTTAGTATAATTGGAAAGATTAGCAATTGATTTGTGTGACAAATTGTCCAACAGTTATGGCATCAATTGATTGACAATTTTCCCCTCCAGTAAACCAGTGAAACTAGATCATCAGTGAGATGAGCGCAATTACTGATTCAAGAACAAATCATCCTGTCTGATTTTGTGAGTCATTTgcttcattgaaaaaaaaaaaactcaatagaaTGAGACGTATGGATtagtgtaatgtaatgtttgGTCAATAACTACCTTTGTGGTTGAAGTTTTGACTACAAGCCACAGCAATTTTTATACAGGCGTGTTTTAAGTGTCAAAGTCTTTTGAAACTGGATCATAGAGTCAATGAGTTGAACTGATGAGTGAACAAATCATCTAGAATGACTTTAAGTTGCTCAACTGATTCACTAAAAATATCTgactcatttaaattatttacatttcagACAGTACAGTCAAGATTTTCATTATTATAACACTTGATTGTTTCATCTCACAAGTTCCTATGCAAAGTTTAATAGTCTATAAAATTGATTTGTGTGATAAATAACAAAACTGCAAGTTGAATGGTGAAATCTTTGATGGTTTTCCTCTACAGTGGATGTAAAAGTGGATCATTGAGTTAAAGAGTTTAACTGAAAAACAACAAATGTCACACAGACCAATTTGTCAACATGCTCAATTGATTCATTGTAATGATCTGactcatttaagacattttagagaTCATAGCACACTCTTAGGCagattttgttgttattttggagCCTGATAGCTGTAGTCCTCAGTAAGATTCATTATACTAAAAATGATGGCCAGGATGTTTGGAAGGAGCAAACTAATATGGGTTTGAAATGACATAAAGATGAGCACATGACAAAATCTTAATTTTTGGTTAAAACTAAGCCTTTTCACTGAACAAGTTGTACACAATATGACGTTTGGCACTGTTTCATTCACTTCTCCAGAAAAAAAGTCTCCTAAATTACCAGATCTTGAGATCTTAAGAAAGCCACTTCTTCCAATGAGAATATCTGCAACTAAAAGTCTATTAGTGACCGTACCTACATCTGGAAAGTCCTTCCTTTCCTGTTGGGAATCCTTATCCATGTATTAAATCTCACCCTTCACCATAATCAGGGTCTAAACTATTCAAAGCCAACATTTCCTTGAGGCTTTAGTGTGTCCGAGTTTTAGTGAATCAAGAGGCTTTATTCCCCCGCGTCTGAAGAAATCATATCATTGGAAAGTGAAAAGCCAAGTGAAAGGGGTTTCCATGCTTTTTGTGCAGTCACCCAGAGAATACTCTCACCCTTTGACTTTTGATAATGTGAACGCATGATTCAATGTCGAAAGTCAAGCTCGGGCAGGTCAGTGCTGTACGAGTGTTAAAAGCTTGTGAAATGGATTTCTAAACACTTGACAGCCTAAATTTAAGCCACGGCGAATGGTAAAgcttaattaaaatagtttttagtgGGCACTTTTTTTCGTACATACACAACCTGAAAACATTTTCACCATATGGCAGTCATTTGAAACGTCTGCTCAATACACCATTACTTAACAAGTGAGTTCATTAGCAGCTGGTAGTGGAAAGATACAAGCACCACTAATTGCAGGAAAGTTGTGGATCTTGTGAAGCTTTTGATGTTTATTTGATCTTGTTGAAGGGTATTCACTGTCGATATTTTATGTAATATCGCAGTTCCATCTGCAAGCTACAGTTGGTTCCCGTCATACTTTGTTCTTGTTTGATCCACATTTAACACATTCAGTAGTCTTCCATTAGGAACTATGCCAGATGCACATTATTTTCTGTTAAAGGGAATAGATTGATGTTGTTTTGGGGATAAATgagcaagcaaataaataattaagtcattaatgaataaaaaacagcTTGGAAACCAGTTGAACCAGCATAGACTAGTTGAAGACAGCAAATAAACtacatacagtactgtaaaacTAAACTCTTCAGAAATAGCTACTGAATAATATAGTTATGTTTTCTATTTCTCACCACTTTATCATCATGTATTTTTCATGCCATGCCACATTGTGAATGTATGAAATGTATAAATAGTCCTGGTACTGcaaaccttttttaaaagtattaaacttaACATTTATGAAGACTGTAATATCCTACTGAATATAGTACTTGTAGGGCTGCAacaggttttttttattgttttgatgtgAAATTTTGAAAGTAAAGTTTAGTTTGAATTTAACatgaataatacaaatgtatcCATCCATATATAGCAAAGAAACcacttgacattttttttttatttgtgcctCAAATGCACTGAATTTTTAGAATGTTTTGATGCtaataaaaaatgtaggtgttGTCAACTCACTGTTGGTAGaataaaaaacatgctaaaattac

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120814-1 Predicted to enable guanyl-nucleotide exchange factor activity. Human ortholog(s) of this gene implicated in ovarian endometrial cancer and ovarian serous carcinoma. Orthologous to human ARHGEF10L (Rho guanine nucleotide exchange factor 10 like).

Ensembl:

ensembl_id ENSDART00000163958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008809 lncRNA downstream 11223 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008011 lncRNA downstream 11235 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008808 lncRNA downstream 11265 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008807 lncRNA downstream 11288 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008012 lncRNA downstream 11317 29211687 ~ 29319825 (-) False XLOC_004188
TCONS_00008023 lncRNA upstream 89253 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008025 lncRNA upstream 171141 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 196671 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 354878 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 397677 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008008 mRNA downstream 248713 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 248967 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 419970 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008007 mRNA downstream 691644 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 716534 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008018 mRNA upstream 11306 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 11306 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 11306 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008019 mRNA upstream 11485 29574922 ~ 29650930 (-) False XLOC_004191
TCONS_00008020 mRNA upstream 86574 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008006 other downstream 735714 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1244218 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1611873 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1827822 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1828010 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 89253 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 246260 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 332935 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 381493 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 537705 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

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