RNA id: TCONS_00008015


Basic Information

Item Value
RNA id TCONS_00008015
length 3777
RNA type mRNA
GC content 0.51
exon number 26
gene id XLOC_004189
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29331142 ~ 29563437 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCACAGCTTCATCTCATCAGCAGCTGGGGGAGAAAGTGGAGGATAAAGAGCAGAGAGAGAAATCCAGATGTAAAGATGAAATCAGCAAGACTGACGCTGGAGATGAGACCAGCACTTGTACAGTCTGGACCTGCTCAAGTGACTTAGAATCAACTCCAGATAAGCAGGCAGATTATTCATCCCAAGCCACAATGACAAGTTACCCTGTGGAGTGCTCAACTATTAACAaTGCAACAGACAGTAAAAGAGATCAAGCTTCAACAGACTCTACAGCACCAGAGGATTTAAATGAAGAGGAAGACCACACTTGCACTGTGGTGAAGATCCAGAGAGATACATGCACTATTAAAACAAACGCAGGGACAGAGGATTTCAGACACAGCCCATCACAAAATGCTGAAGgaAATGTGTCTACAGAATCAGAACACCAGACGGCTGGTCCGGAGGTGATCTATGATGATGTTCCCAGTGAAGATCTGTCTTCAGGAGaagCTGACTTGATATATGAAGACGTTCAGAAAGAGGAGGGCTTGCAAGGGCCCAATAATGGCTGGAGCTCAAGTGAGTTTGAAAGCTATGATGAGCAGTCTGACTCTGAGAGGCCGCCAACCCGCAGcaagCTCTCCCCTGATGTGCGGCGACTGAGAGACCGTTACACCAGGACCAAACAGGAGCTAGCCATGAGACTGGGGGGCAAACACCAGGTCCATCAGCTGATGCGGGCGGCACGCAGCGGAACGAAAGATGGCCTGGAGAAGACCAAAATCGCTGTGATGAGGAGAGTTTCATTCCTACATAAAAAGGACCACTCAGATGACACCGAGGATGATACAGGGTATCTGGATGTGATGGTATCTGAAGCAAAACACCCACCTGCACAACTGGGACCAATGCCAGATGGACTAAGCAGCCAGcagATTGTTAGACGCCATATTTTGAGCTCCATTGTGCAAAGTGAAAGAAGTTACCTGGACTCTCTTAAAAGAATCCTGCAGGAATACCAGCGACCGCTGATGGAGGCTGAGCCTCGGATTCTCAGTGTCAGGAAAATCCGGCCAATTTTTTTCCGTCTACGAGAGATCACGCAGTGTCACTCCATGTTCCAGATAGCCTTGGCATCTCGGGTGGCCGAATGGGACTCTTGTGAAAAAATTGGGGACCTGTTTGTAGCTTCATTTTCCAAGTCTATGGTGCTGGACGTTTATAGTGATTACGTCAATAACTTCACCAATGCCATGGCCCTCATTAAGAAAGCCTGCTTGTCTAAACCAGCATTTCTGGAGTTCCTCAAGAGGAAGCAGGCATCGAGCGTTGATCGCATAACCCTTTATGGTCTGATGGTGAAGCCTATTCAGCGCTTTCCACAGTTCATTCTCCTCTTGCAGGACATGCTGAAGAACACTCCCACTGGCCATGTGGACAGACTGCCCTTGCAACTGGCTCTGACTGAATTGGAGACCCTCGCTGAGAAACTCAATGAGCAGAAAAGGGTGGCTGATCAGATCACTGAGACACAGCAGCTGGCCCGCTGTGTCAGTGACCGTTCTCTCAGCAAGTTGCTCAACTCGGAGCAGAGCTCTTTGATCCTTTGTGAGACGCTGATTGAGACGGTGTACGGTGAACGAGGACAGGTCCTCAAGTCTAAGGAGCGGAAAGTCTTTCTCTTCGGTGACGTGCTCATCTGTGCCAACATCAATGTCAAGGGGCCCCCTGACATCAGCAGTTTGGTCCCAGTTGGTCCCAAGTACACCCTCAAATGGAGCGCCCCCTTACAGCAGGTCCAGGTAGTTGAAGTGGGTCAAGAAGCATCCCAATCCAAGGACACACTTTATCAGCTTGGAAGTGTCAAGCGTCCGGGCAGCTCTTTTGGACAAGGAAGTATCATTCTCGGGCCGCCCCGCCTGTATCACGAACTGCAGGAGCTGCAGCACGACCTCTCAGTAGTGGAGCAGGTCACTCTGCTCGTGGGAACTTTACAGGGAACGTATCAGAATCTGAACACCACAGTGGCGCAGGACTGGTGTTTGGCACTGCAAAGGCTGATCCGCATCAAAGAAGACCAAATTCAGAACGCCAACAAGTGCCGTTTACGACTGCAAGTTCCTGGCAGACCAGACAAGTCCGGGCGTCCTGTGAGCTTCACGGTGGTCTTCAACACACCGAGCCCCGTCAGCAAGATTTCCTGGGCCAACCGGTTCCACCTGGCGAAGATAGCACTGAGAGACGAAAACACACCAGGTTGGTTCTTTGCAGAGGATGATGGCAAGACAAAAGCTCCATTTTGGTGTCCACTGCTGGCCTGCCGCATGCCTGTTTTCACCTCTAAAGCCCCGGAATGGAAGCTGGAGGCTGCTCTTCATAATCCTGTTCAGTGTGCTTTACTCGGTTTCTCAGCGGCAAGCACTTCACTTCCTCAAGGCTACCTGTGGGTAGCTAGTGGAGCTGATTCCACTCAAGGCCAGGTGGACATCTTCTCCTTGAACAGACCCACACCTCGGCCTGTAAAATCCCTCCAGATGGGAGCTCAAGTGAGGTGTCTGGAGTATGTGCCTGAGCCCAGCCCATCAGAGGATGCGGAAACCAGCCTGCACAGCTCCACTGAAGTTGGAAATACTATCTGTGTAGGACTTGATGATGGCAGCATCTTGGTCTATGGCAGTATGGACTCCGCTGCCCAGTGTCTTGTGACTCTCCATAATCCTGAGGGCTGTCCAGTTTTGTGTCTCAAACATTGCAATAATGTTCTGTTTGCTGGCCTGCGGGATGGAAAGCTCATGGTGTATGAGAGACATCACAGAGGGGGACTTTGGAACCAAGACACCTCTAGAAAAGTAACAATTGGTTCACATCCCATCAGGACTCTGCTGGCTTTGGAGAACTCGGTCTGGGCTAGCTGTGCTAACACAGTTACTGTAGTCAACGGCTCCAGTTTGTCCACTCAGAGATTTGAGGTCCATCAGGACCCGATGGTGAGTGTGGCCCACATGGTGCGAGCCGGAGGTGgtgtatggatggctttttctGAAGGCTCTTCTATACGTTTGTTCCATACGGAAACACTGGAGCACCTGCAGGAGATCAACATTTCCACACCCTCGTCATTTTACAACCCCAgTCAAAAGAGCATGAGGGTCACCAGCCTGTTGATTTGCCAGGGGCTGCTGTGGGTAGGCACTGCTCAGGGTATTATCATCACCCTGCCAGTGCCTAAGCTGGAGGGCATCCCCAAAATTACAGGTAAGGGGATGATGTCCTTCAATGCTCACTGCGGGCCTGTGGATTTCTTAGTTGCCCTTTCCAGCACATTGTCCCCTGATCTTCTAAAACGGGACTCTGTGATAGAAGGTCACGATTCGGGCTGTGGAGTGGAGGACCGCAGCGACTCATCCTCTCAGGAATCCCTCCAGCAGCCCAGTGTTTCTACCCAGGTGGATGGAAAAGGGAAGGGACGGGGTGTTTTACTACAGTACCGTCTACGCTCAACCTCAGGGTTACCCGGACGGCCATTAACCGCACGAGGAGACGAAGCCTCAGACTCATCTCTAGAGTCTCTGGAGCACAGCATGGAAGATGGCTCAATTTATGAACTCAGCGATGATCCAGACATGTGGGTCCGGGGTCGACCCTGCGAGAGGGAAGGGGTGAGGCGGGACAGGGTCACCTCGGTCGCAGTCATTTCGGGAGGTAAAGGTTTCCGTCGACTAAGGGAGGGATCGGTGACAGCCACTATGGAAAGCACACTTATGATCTGGCAGCTTCCTCTCACTGTTTGA

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120814-1 Predicted to enable guanyl-nucleotide exchange factor activity. Human ortholog(s) of this gene implicated in ovarian endometrial cancer and ovarian serous carcinoma. Orthologous to human ARHGEF10L (Rho guanine nucleotide exchange factor 10 like).

Ensembl:

ensembl_id ENSDART00000131165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008809 lncRNA downstream 15381 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008011 lncRNA downstream 15393 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008808 lncRNA downstream 15423 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008807 lncRNA downstream 15446 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008012 lncRNA downstream 15475 29211687 ~ 29319825 (-) False XLOC_004188
TCONS_00008023 lncRNA upstream 112226 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008025 lncRNA upstream 194114 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 219644 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 377851 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 420650 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008008 mRNA downstream 252871 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA downstream 253125 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA downstream 424128 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00008007 mRNA downstream 695802 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008005 mRNA downstream 720692 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008018 mRNA upstream 34279 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA upstream 34279 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA upstream 34279 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008019 mRNA upstream 34458 29574922 ~ 29650930 (-) False XLOC_004191
TCONS_00008020 mRNA upstream 109547 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008006 other downstream 739872 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1248376 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1616031 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1831980 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1832168 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008022 other upstream 112226 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 269233 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 355908 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 404466 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 560678 30101142 ~ 30101257 (-) True XLOC_004200

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05250669_05357112.mRNA True 3522 mRNA 0.52 24 CI01000306 5250669 ~ 5357112 (-)