RNA id: TCONS_00008031


Basic Information

Item Value
RNA id TCONS_00008031
length 1659
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_004195
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29795155 ~ 29833698 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCAGGCTCAGGAGACCAGAAAGCAGGAAACCAGCATGGTTGAGTGAGGATGAGACTTCCCAGCTCTGTCCTTGTGTCGGTCTCTTTGTTTACGGCCGAGACGACAGCGGCTCTGTATCTGAGCTCCACGTACCGCTCCGCAGGCGATCAGATTTGGCAGGGTTTCACGCTCCTCTTCACGCTGGTGCCATCAGTGCTGGTGCAGCTCACACTCATCTTTATTCACAGAGACCTGAGCAGAGACAGACCTCTAGTGCTGCTGCTTCATATCTTACAACTAGGTCCAATAATAAGGTGCCTGGATGCCTTCTGTATCTATGGCAGTGCAGGAAAGGTGGAGGAGCCGTATGTCACCATCACCCGTAAAAAGCAGATTCCTCGCGAAGGACAGACGGAGGAGGTGGAGCAAGAAGTGGGACAGGCAGAGGGGAAGTTAGTGACCCACAGAGCCGCTTTCGCCAGGACTTCTGTCATACAGGCCTTCCTGGGCTCTGCACCCCAACTCACACTACAGCTCTACATCTGTGTGCTCCAGAGAAAACTTTCTATCGGCCGAGGCACACTGATGGTCATCTCCCTTCTCTCTATTGTATACGGAGCCTTACGTTGCAATATTCTCGCCATAAAGATACGCTACGATGACTACGAAGTCTCCGTGCGTCCACTGGCATACATGTGCGTGTTCCTGTGGCGTGGGTTTGAGATTGCCACCCGTGTGGCCGTCCTGGTCCTCTTCAGCTCCGTGCTGAAGGTATGGGTGTTTCCGGTGGTGTTGGCCAACTTCATCCTCTTCTTTCTTCACCCGTGGGCCCTTTTCTGGAGCAGCCGATCTCCATTTCCAGAGAACATTGAAAAAACATTGACCCGAGTGGGAACCACCATCGTCCTCTGCATGCTGACCTTTCTATATGCTGGCATTAATGTGTTCTGCTGGTCCGCCGTGCAGCTCAAATTGGATGACCCGGATCTGATCGACAAGGGTCAAGCTTGGAGGAGGTTAGCTGTGTATTATTCACTTCGTTTTGTTGAAAACACAGGTCTGACTTTGATGTGGTACATCCACCAGACTGAGTTCTACAATTGGGTGGATGCGCCGGTGTTAGAAGTAATGTTGTTGTTGGGTTACGGCACAGCGGTGTTCTTTATGTTGCTTTTTTACCAGTTCTGCCACCCTTGTAGGCAACTGTTTTCCTCCAGTCCGGCTCAGGGCTTTTGGGAGTGTTGCGGATCTCTCTGTATGCTCCGTGGGACTCTTTCGCAGCCTGGTTCCATGAGGAGCAAGCCACCGGGGAAGGAGACCGGAGATGATCCGGTCTGTGTTACCAAAGGAGACATGACACAGAGTCTGTGCGGTGCCGTGTGAGGAAAGCACAACTTAAAAGGAGAGTTCAGCACAAACATGGACATTGTCTTTCTTTTGTTCAACACCAAAAGATGTTATGAACAATGTTGGAAATTGGTTGCCGAAATTGcgaaaaacaattactatggaaatcaatgactgtttccaacttgcttcaaaatatcttcttttgtgattgaAACAAGTAGATGGTGAGAATATGATgacagttttcatttattttgggtgaattatcccttttaaAGTAAGGGACAGCTAAACTTGTAATATATTGTTAATGATCAAAATATAAGT

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0042554 superoxide anion generation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0043020 NADPH oxidase complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function

KEGG:

id description
ko04066 HIF-1 signaling pathway
ko04145 Phagosome
ko04216 Ferroptosis
ko04217 Necroptosis
ko04613 Neutrophil extracellular trap formation
ko04621 NOD-like receptor signaling pathway
ko04670 Leukocyte transendothelial migration
ko05171 Coronavirus disease - COVID-19
ko05140 Leishmaniasis
ko05010 Alzheimer disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko05415 Diabetic cardiomyopathy
ko04933 AGE-RAGE signaling pathway in diabetic complications
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080908-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in McLeod syndrome and hematopoietic system disease. Orthologous to human XK (X-linked Kx blood group).

Ensembl:

ensembl_id ENSDART00000079149

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008027 lncRNA downstream 56378 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 81142 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008023 lncRNA downstream 160519 29652690 ~ 29657870 (-) True XLOC_004191
TCONS_00008811 lncRNA downstream 273400 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008810 lncRNA downstream 498566 29279588 ~ 29319823 (-) True XLOC_004188
TCONS_00008036 lncRNA upstream 84617 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 127416 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008053 lncRNA upstream 527930 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008812 lncRNA upstream 1366521 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008813 lncRNA upstream 1371227 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008028 mRNA downstream 1960 29795155 ~ 29816429 (-) False XLOC_004195
TCONS_00008026 mRNA downstream 50335 29756860 ~ 29768054 (-) False XLOC_004194
TCONS_00008024 mRNA downstream 132536 29682909 ~ 29685853 (-) True XLOC_004192
TCONS_00008020 mRNA downstream 159993 29650011 ~ 29658396 (-) False XLOC_004191
TCONS_00008021 mRNA downstream 160442 29652456 ~ 29657947 (-) False XLOC_004191
TCONS_00008032 mRNA upstream 56130 29889828 ~ 29916607 (-) False XLOC_004196
TCONS_00008034 mRNA upstream 75504 29909202 ~ 29916607 (-) True XLOC_004196
TCONS_00008035 mRNA upstream 83915 29917613 ~ 29936755 (-) False XLOC_004197
TCONS_00008037 mRNA upstream 103045 29936743 ~ 29946640 (-) False XLOC_004197
TCONS_00008038 mRNA upstream 103050 29936748 ~ 29946927 (-) False XLOC_004197
TCONS_00008030 other downstream 2187 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008022 other downstream 160537 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008006 other downstream 1222961 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1731465 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 2099120 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00008033 other upstream 62674 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 111232 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 267444 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008048 other upstream 320120 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008052 other upstream 524411 30358109 ~ 30364824 (-) False XLOC_004204

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05555926_05562924.mRNA True 1339 mRNA 0.53 3 CI01000306 5555926 ~ 5562949 (-)