RNA id: TCONS_00008021


Basic Information

Item Value
RNA id TCONS_00008021
length 745
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_004191
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29574743 ~ 29658396 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAAGGATCAAATCGATTAGTCTGGGATCGATTATAACGGGAAGTTTTCAAAGCGCATGCGCTTTTTCTCCTCTTCCTTTCTGCCAAAACTGTCGGCCATGGCCCCGATCAAGAAGCAGGTGACTAAGGGTGGCAAGAAGAAAAAGCAGGTCTTAAAGTTCACCCTGGACTGCACACACCCTGTGGAGGATGGCATCATGGATGCTGCCAACTTTGAACAGTTCCTTCAGGAGCGCATCAAAGTAAATGGCAAAGCTGGGAACTTGGGTGGTGGCGTGGTCTCTATAGAAAGGAGCAAGAGCAAAATCACAGTGACATCAGAGGTCCCCTTCTCCAAGAGGTATCTGAAGTATCTTACCAAAAAGTACCTCAAGAAGAACAACCTGCGTGACTGGCTGCGTGTAGTAGCTAACACCAAGGAAAGCTACGAACTGCGCTACTTCCAGATCAACcaggacgaggaggaggaggatgaagattAAATCCATGCCACTcttttgtaaatgtaataaatttccAAAAGAAATCAGTTTCCTTGCTTCTGCTGTGTTCATTTCAGCATATTTTAAAACGTGCATAATGCTCTCAAGGAGTGAGAGTGCTAGATAAATCTGCTTGATTTATAATAGTGCATTTCTTTCTATTTTTAGAGTCTGTTCATTTACTGCATTAATGTATACAGGACTCCAAGTCAGGCTGGACCAATAATTTCCATAGCAACAATAAAGTTTGTGCTATAACAGA

Function

GO:

id name namespace
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0060322 head development biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-051113-276 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

Ensembl:

ensembl_id ENSDART00000125753

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008811 lncRNA downstream 107467 29537982 ~ 29544989 (-) True XLOC_004190
TCONS_00008809 lncRNA downstream 332537 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00008025 lncRNA upstream 76631 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008027 lncRNA upstream 102161 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008036 lncRNA upstream 260368 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008040 lncRNA upstream 303167 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008053 lncRNA upstream 703681 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008019 mRNA downstream 1526 29574922 ~ 29650930 (-) False XLOC_004191
TCONS_00008018 mRNA downstream 29076 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008017 mRNA downstream 29076 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008016 mRNA downstream 29076 29574743 ~ 29623380 (-) False XLOC_004191
TCONS_00008014 mRNA downstream 89019 29331142 ~ 29563437 (-) False XLOC_004189
TCONS_00008024 mRNA upstream 24962 29682909 ~ 29685853 (-) True XLOC_004192
TCONS_00008026 mRNA upstream 98913 29756860 ~ 29768054 (-) False XLOC_004194
TCONS_00008028 mRNA upstream 137208 29795155 ~ 29816429 (-) False XLOC_004195
TCONS_00008029 mRNA upstream 138923 29796870 ~ 29818866 (-) False XLOC_004195
TCONS_00008031 mRNA upstream 160442 29818389 ~ 29833698 (-) True XLOC_004195
TCONS_00008006 other downstream 1057028 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00007992 other downstream 1565532 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 1933187 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 2149136 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 2149324 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00008030 other upstream 151750 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 238425 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 286983 29944930 ~ 29946640 (-) True XLOC_004197
TCONS_00008043 other upstream 443195 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008048 other upstream 495871 30153818 ~ 30155835 (-) True XLOC_004201

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002182 True 661 mRNA 0.48 4 CM030136.1 6383055 ~ 6385782 (+)