RNA id: TCONS_00008081


Basic Information

Item Value
RNA id TCONS_00008081
length 1700
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_004230
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33846440 ~ 33857911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCAGTTTAGCAAAGAGAGAGCGAGGATGCAGCAAAGCTGGACTTTCACCCAGGGGACTGCTTAGAGagcagttttattatttgtttttctttcggATAGACAATCACATCCACACATAATCGCGTTAGGATATGTGAGTGTTGCAGAGAAAAGGCGCGCAGCCCAGATGAGCAGAGCTAAGAGGATTTAATGCAGCTGGACACGAGCCACGCTGAGTAAAGAAGAagattatattgttttaatcaAATGCAAAGAAGTTTTCATTGCCGGTCACTTTGAGTTCGGACTGTCCGGGAGCGATGTTCGTCATCACTGGGTTTCAGTCTCACTCTTTGCGCACTGTAAGGATGTTCAAAGCACAGAAATGCATGGCTCCAACTCTTCTGTAGAAGGgcATACTGATACCAGACCAAGCCACAAGTGGACCTGATCTTTACTAACCCTGTGAGCTGGACTTACAAAATACATGAAGATGTGCCAGTGCTACTCTGCCCTGCTAATGCTCTGCTTACACATGGTGACATGTGGAGCGAAGCTCGGAGCTGCTGTGGCTCCTCTGGGTTGGGCAGAAAATGATAAAGAGGGAAGTGTTTCTCCTTACGCCTCTCGTTCTGAGATTCTCAAATCCCTGCGGCTTTTCTCCCACACGTCCCAATCTAACAGCCCAAACCATGAAACAGCTCCGGACCCTGGGGCACTGGATCTGTGGGCTTGGTTATCCAACCACACCGATAGCGAGGGAACCCTCTCGAGGGCCAAACGTCGTCCCTATGTGAAAACCGGCAAGTTTAAGAAGATGTTCGGCTGGGGCGACTTCCATTCCAACATCAAAACCGTCAAGCTCAACCTTCTCATTACTGGGAAAATTGTCGACCACGGCAACGGGACCTTCAGTGTCTATTTCCGTCACAATTCCACCGGTCTAGGGAACGTGTCTGTTAGTCTGGTCCCTCCTTCCAAGGCTGTCGATTTTGAGATCACTCAACAGGAGACCATCGAGGTGCCCAAAGACAGTAAGGCGTTCAACTGTCGAGTGGAATACGAGAAGACGGACCGAAGCAAGAGGACGTCCGTTTGCAGCGACTTCCCTAACAGGGTTTGCTTTCAGGAGCAAACCCAAAGTCATGTGTCCTGGCTGTGCTCCAAGCCCTTCAAGGTGATCTGCATCTACATTGACTTCTTCAGTGCAGACTATAAGCTGGTACAGAAGGTCTGTCCAGACTACAACTACCACAGTGACACTCCATACACCTCAGTGGGATAGCATATAGCCTGCTTTGGGTTTGTGGAGGTATGTGAGGTGCCGTTTCATTGTTACAGCCTCTCTGTCTTGTAGTTTGCTCGTCCTGTTCATAAAGGATGGGATAAATGGAAGAAAGGTCAGATGAGGAATCACTCTTTCCAAACATACATGACCTGTCCTTCTTTAGGGAGGTTGAGGTTGCACTTTATCTTACAGTTCTGTTTCACAAGAAATAGCTCACcccaaaaatgtattcatttcttattttattcatttattatttgtctcctattaaacacaaaataggatattttgaagaatgctggtaggtggcatgcattgacttccatagtcatttttttttcttctatggaagttgatgggtgccagcaaccaacattcttccaaatatctttgTTTTATGTGTTCAACTAAAAAAGAAATCCattaaacc

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090708-1 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human NXPH2 (neurexophilin 2).

Ensembl:

ensembl_id ENSDART00000165370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008832 lncRNA downstream 157491 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 160529 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 444964 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008830 lncRNA downstream 445052 33305132 ~ 33401388 (-) False XLOC_004227
TCONS_00008829 lncRNA downstream 463607 33305132 ~ 33382833 (-) False XLOC_004227
TCONS_00008482 lncRNA upstream 134122 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008099 lncRNA upstream 362439 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 364982 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 391545 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 457614 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008080 mRNA downstream 227828 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008079 mRNA downstream 234007 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008074 mRNA downstream 1122589 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008072 mRNA downstream 1973812 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008070 mRNA downstream 2570360 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008082 mRNA upstream 3266 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA upstream 6357 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008084 mRNA upstream 6591 33864502 ~ 33868908 (-) True XLOC_004231
TCONS_00008085 mRNA upstream 12446 33870357 ~ 33919309 (-) False XLOC_004232
TCONS_00008086 mRNA upstream 15710 33873621 ~ 33919014 (-) True XLOC_004232
TCONS_00008078 other downstream 475073 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1108847 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2674186 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3337649 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 3481616 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008088 other upstream 108247 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 497633 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 608484 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1367111 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3441460 37299371 ~ 37299485 (-) True XLOC_004279

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07680537_07684881.mRNA True 2573 mRNA 0.40 2 CI01000306 7679868 ~ 7685987 (-)