Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008096 |
| length | 914 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 3 |
| gene id | XLOC_004240 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 34154593 ~ 34188346 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006812 | cation transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-120521-1 | Predicted to enable ATP binding activity and metal ion binding activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A3 (ATPase 13A3). |
| ensembl_id | ENSDART00000181571 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008482 | lncRNA | downstream | 165031 | 33992033 ~ 33993147 (-) | True | XLOC_004235 |
| TCONS_00008832 | lncRNA | downstream | 469229 | 33676834 ~ 33688949 (-) | True | XLOC_004229 |
| TCONS_00008831 | lncRNA | downstream | 472267 | 33676834 ~ 33685911 (-) | False | XLOC_004229 |
| TCONS_00008481 | lncRNA | downstream | 756702 | 33344982 ~ 33401476 (-) | False | XLOC_004227 |
| TCONS_00008480 | lncRNA | downstream | 813721 | 33339539 ~ 33344457 (-) | False | XLOC_004227 |
| TCONS_00008099 | lncRNA | upstream | 53390 | 34220350 ~ 34225557 (-) | False | XLOC_004242 |
| TCONS_00008100 | lncRNA | upstream | 55933 | 34222893 ~ 34225798 (-) | True | XLOC_004242 |
| TCONS_00008101 | lncRNA | upstream | 82496 | 34249456 ~ 34255220 (-) | True | XLOC_004243 |
| TCONS_00008833 | lncRNA | upstream | 148565 | 34315525 ~ 34358689 (-) | True | XLOC_004244 |
| TCONS_00008834 | lncRNA | upstream | 383887 | 34550847 ~ 34577001 (-) | False | XLOC_004249 |
| TCONS_00008094 | mRNA | downstream | 6691 | 34151177 ~ 34151487 (-) | True | XLOC_004239 |
| TCONS_00008092 | mRNA | downstream | 10973 | 34116734 ~ 34147205 (-) | False | XLOC_004238 |
| TCONS_00008093 | mRNA | downstream | 33859 | 34118359 ~ 34124319 (-) | True | XLOC_004238 |
| TCONS_00008091 | mRNA | downstream | 60741 | 34091410 ~ 34097437 (-) | True | XLOC_004237 |
| TCONS_00008090 | mRNA | downstream | 60760 | 34084532 ~ 34097418 (-) | False | XLOC_004237 |
| TCONS_00008097 | mRNA | upstream | 34223 | 34201183 ~ 34219211 (-) | True | XLOC_004241 |
| TCONS_00008098 | mRNA | upstream | 53031 | 34219991 ~ 34232906 (-) | False | XLOC_004242 |
| TCONS_00008103 | mRNA | upstream | 234500 | 34401460 ~ 34480822 (-) | False | XLOC_004246 |
| TCONS_00008104 | mRNA | upstream | 235456 | 34402416 ~ 34478225 (-) | True | XLOC_004246 |
| TCONS_00008106 | mRNA | upstream | 321909 | 34488869 ~ 34522249 (-) | False | XLOC_004248 |
| TCONS_00008088 | other | downstream | 191906 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008078 | other | downstream | 786811 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |
| TCONS_00008075 | other | downstream | 1420585 | 32731165 ~ 32737593 (-) | True | XLOC_004221 |
| TCONS_00008067 | other | downstream | 2985924 | 31170349 ~ 31172254 (-) | True | XLOC_004210 |
| TCONS_00008056 | other | downstream | 3649387 | 30424226 ~ 30508791 (-) | True | XLOC_004205 |
| TCONS_00008102 | other | upstream | 188584 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008105 | other | upstream | 299435 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008119 | other | upstream | 1058062 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008174 | other | upstream | 3132411 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008194 | other | upstream | 4008111 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
