RNA id: TCONS_00008093


Basic Information

Item Value
RNA id TCONS_00008093
length 294
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_004238
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34116734 ~ 34147205 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCGTCGTGCTTGACGTCATCTTATGGAAGCATGTGTTCAGCAGAGACAAGCAGGGAAGCTATGGCGTCTCCCCTGCAGGCCCGATACCACAGgGAGGAATAGACATGTATGGATCTAAATGCCTCTCCTGGCTCTGCTGCCGGCGAAGAAAAGTTCCCAAGGCACGCTACATGCATCTGGCACAAGAATTAAGCGTAGATCCTGACTGGCCCCCCAAACCCAAGAGCACTACTGAAGCCAAACCCGCCCTACATCCAGATGACTGCTCCTACCAGATCGAGGCGATTTCCTAG

Function

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120521-1 Predicted to enable ATP binding activity and metal ion binding activity. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A3 (ATPase 13A3).

Ensembl:

ensembl_id ENSDART00000173275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008482 lncRNA downstream 125212 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008832 lncRNA downstream 429410 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 432448 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 716883 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008480 lncRNA downstream 773902 33339539 ~ 33344457 (-) False XLOC_004227
TCONS_00008099 lncRNA upstream 96031 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 98574 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 125137 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 191206 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008834 lncRNA upstream 426528 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008091 mRNA downstream 20922 34091410 ~ 34097437 (-) True XLOC_004237
TCONS_00008090 mRNA downstream 20941 34084532 ~ 34097418 (-) False XLOC_004237
TCONS_00008089 mRNA downstream 52641 33996526 ~ 34065718 (-) True XLOC_004236
TCONS_00008087 mRNA downstream 158041 33921358 ~ 33960318 (-) True XLOC_004233
TCONS_00008086 mRNA downstream 199345 33873621 ~ 33919014 (-) True XLOC_004232
TCONS_00008094 mRNA upstream 26858 34151177 ~ 34151487 (-) True XLOC_004239
TCONS_00008095 mRNA upstream 30274 34154593 ~ 34188346 (-) False XLOC_004240
TCONS_00008096 mRNA upstream 33859 34158178 ~ 34166960 (-) True XLOC_004240
TCONS_00008097 mRNA upstream 76864 34201183 ~ 34219211 (-) True XLOC_004241
TCONS_00008098 mRNA upstream 95672 34219991 ~ 34232906 (-) False XLOC_004242
TCONS_00008088 other downstream 152087 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 746992 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1380766 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2946105 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3609568 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008102 other upstream 231225 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 342076 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1100703 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3175052 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 4050752 38175071 ~ 38175150 (-) True XLOC_004294

Expression Profile

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