RNA id: TCONS_00008121


Basic Information

Item Value
RNA id TCONS_00008121
length 6856
RNA type mRNA
GC content 0.42
exon number 18
gene id XLOC_004256
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 35447417 ~ 35575830 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTGCATCCACCTGCCAAGCTGTTTGGGCAGCATTTGAGGCGAGCGAATGAGTGCAGGCAGAGGCACGCTCGTGTTTGGAGCTATTCAGACGGACATTCACAGCGCTCAAGCCGCTCACGGACTTGTCAGGTGGTTTTTACGTTTCTTTAACGCTTTTTAGTTTGAGACCAAACGGGATTTTAAACCAACTCTACCAAATGAACACTACAGTGAAGAAGAACACCGCGCTCAGGTGTTCAGAGAGATAAGGACTATACTTCACTATACCTGCAGGACCTGGGACATAAAAagacaaacatttacaaaaaacagACGTTTACTGGATTCACTCAGTGAGTTCAGGCTCAAGGTTCTTTTTGGACTGTTTTGGAGCGAGCAGtGACCTCTGCACCTGTCTTCAACGCATGCACCATGCTCTTGGACAGTCTATGGCCAGTCCAGGTTCTCCTGGTTCTGTCTGTCCTAACGTTGGTCTTGGGCAATGAACCTCAAAATGCCCCGCGGGTCTTCTTGTCCTTCAAAGATCTGAGGTCTACAGGTACAGCCCATTACTTCTCTTTCCTGCTCAACACATCTGACTATCGCATCTTGCGCATGGATGAGGATCACGACCGCATGTATGTGGGCAGCAAAGATTACATCCTGTCTCTGGATCTCCACGACATCAACCGAGAGCCACTCATAatACACTGGCCTGTTTCCCCGCAGAGGAAGACTGAGTGTGTTTTAAGTGGCAAAGACACAAACGGCGAGTGTGGTAATTTCATCCGTCTGATCGAGCCATGGAACAGGACGCACTTATATATTTGTGGGACGGGCGCCTACAACCCCGTGTGCACTTATGTGAACAGAGGACGCAAGCCTATGGAATACGTGTTCCATTTGGAGCCCGGCAAGGAAGATTCTGGGAAGGGAAAGTGCCCGTATGATCCAAAACTGAACAGCGTCTCTGCTTTGATTAATGGAGAACTGTATGCAGGGGTGTATATTGACTTCATGGGAACAGACTCTGCTATTTTCCGCACTTTGGGGAAAAACGCAGTCATGCGTACCGACCAATACAACTCAAGATGGCTGAATGACCCATCATTTGTCCATGTGCACCTCATTCCTGACAGCGGTGAGAAAAACGATGACAAACTCTACTTTTTCTTTCGTGAAAAGTCTTCTGAAATGGGCCAGAGCCCGAAATCACAATCCCGCATCGGCCGCATCTGCCTGAACGATGACGGTGGTCACTGCTGCTTGGTCAACAAGTGGAGCACCTTCCTGAAAGCCCGTCTCATCTGCTCAGTCCCAGGAGCTGACGGGATTGAAACGCACTTCGATGAGCTCAGAGATGTGTACATACAGCCCACGCAGGACACTAAAAACCCAGTCATCTACGGGGTCTTCTCTGTGTCCGGCTCTGTATTCAAGGGCTCGGCGGTCTGCGTCTACTCCATGGCGGACATTCGGATGGTGTTCAATGGACCTTTTGCCCACAAAGAAGGTCCCAATTACCAGTGGGTGGCCTACACTGGGAAAATCCCCTACCCCCGTCCGGGAACAtgtCCTGGTGGGACTTTCACCCCGAACATGAAGTCCACTAAGGACTACCCAGACGAGGTCATCAACTTCATGCGGAATCATCCCACCATGTATAACTCCGTGTATCCAGTGCACAAGCGCCCCCTGGTGGTCAGGACTAACGTGGACTATGAGTTCACAACCATCACTGTGGATCAGGTCACAGCGGCCGACGGAAACTATGAGGTGCTCTTCCTGGGAACAGACAGAGGAACAGTGCAGAAGGTGATCGTCCTACCCAGTGATGACCTGCAGACAGAGGAGCTTGTGCTGGAGGAAGTGGAGGTCTTTAAGgtcCCTACTTCTATCACAACAATGAAGATTTCTTCAAAACGGCAACAACTGTATGTGGCCTCTGCGGTGGGAGTGACGCATATGGCTCTGCACCGCTGTGATGTCTACGGCGAGGCCTGTGCTGACTGCTGTTTGGCCCGGGACCCCTATTGTGCATGGGACGGCAAATCCTGCTCTAGATACTCAGCCTCGCAGAAGAGGCTTCCTTTTAGACGCAGCCGTCGACAAGACGTGAAATACGGGAACCCCATACGCCAGTGCAGAGGATACAATTCCAACAttAATAAGAACACACTGGAGACAGTGCAGTATGGGGTGGAGGGCAGCAGCACCTTTCTGGAGTGCCAGGCCAGATCACCACACGCTGCCATCAAGTGGCACCTTCACAGAGACAACAGCGACCGGAGGAGAGAAgtcCGCAGTGATGGCCGTGTGCTGAAGACGGATCAAGGTTTGCTTCTGCGCTCTCTCCAGTCCTCAGACTCCGGCATCTACATCTGCACGGCCACAGAGAAGAACTTCAAGCACACGCTGGTCAAACTGCAGCTGCTCGTCCTGACCAATCAGGCCGTCAACAACATTCTGGTGGACACGGGACGTCCGGTCGTCTCTCCGCTCCAGTCCAGCGCCTGGACCCCCAGTGCCGGGCAATACAAAGACCTGCTGACCATCCTCAGCCAGCCCGAGATGGGCCTCATAAACCAGTACTGCCAGGACTATTGGCAGTATGGAGACCCTCTGACCGGGGTCATCAAGGCCAAAGACCTCAAAGAGCTCAAGGAGCAGAAGAAACCACGAAATCGCAGACATCACGGGGACGAGGAGGAGACatgagagaaaaataaaacacaaattaaacgAGAAAAACTTCCATCAAGTGAACTTCAGAAGGGAAGACATGTCCTTTTAACACATAAAGATGATATCATACACAGTATTTATTGTAGGTTGTATATAGTACCATTCTGTGGATTTCTTTGTACTTAAATAGAAAAATGAATGCTCTTTTGTGTATAAGTACCTAATGGGcgaatattattgtaatattatttttcaatttccaTCTTCCGGGCATTTGACGACTCGTGTATATCGACATGAACTCACAGACTATTGAACTACTCTGAGAATGGAAAGAGCGGACGGGGAGAAATCTTCCCTCTTGGACTCTTCATGCGGAAAATAGGCGGGGCATGCGGCGGTGACATCATAATGCTCTTCACCACTAGTCCCACCCCCTAAGTGCATTCTGGTCCCTCATTGGTTACAATGAAACACCAGCTCATATTGTCTTCCTAATGTCCGTCTACATGCACACAAAACATCGGTTCTCATTGCACAAATGTTTCAAGTAATCATGGCACAACTTTTATTTGTGACTGGACAAGTTTTGACTAATGTACAACAGCCGCTGAGGGCTCTTAGtatgcttttattgtttttttatgccACTTTTGAAAAGACTACAAGAACAAACCAACTTGCATCATGATGATGATGTCTTGAATCCACATAGAGGAAAGAATGTCCAGATCATATTTcaagatttcattcatttgaaCCGTTTTGATATACAGTAAGCAGATGTTAATGCTTTATTTTACGGTATTATTGACCTTTTTGaggcatgtaaacaaaaacaatggtcccaacgtatttcctgttttacatttttattttttatagcttccgagaatccaaaaagagccacatattgataaataatgttgtgatagctgttttaacattaggttatgattgaattgccttttgttacagatatgaaatagtttaataacaagcaggaaatgttcatgggccaatgacatcaccacgtTAAAATGGTCTGTACTATGTTTTAGATATTTTGCCCCATATTTTATAGGATTGTATTACATTAAAATcagtataattattaagtttGAATTACCATAAACCCAAGTAAATACTAATATTTTAATTACTTCAAAATATTAGTATTCTTAAATTCTTCACAATGTTCATTTAACCAAGAATGGGATTTTATAGACAGTTAAGCCATTATTGATATAATTTTCATAAGCATATCCCCGCTATTTTACTGTTACAATACATTtagtaaagtttttttatttgcatgaagAACAAATactaacaatatttatatatttttttccaaatggaTTTACAAATCTTATCATGGTAGTCATAATTAGGTTTAAAGATAATTACTATTAAAATTACAGTCAAAAAGGCTTCCTTtgtaatatatatgagcaatatcacatgagaaaTGCCATCAGATTTCCCTTTCGCAATCGGAAGATTACTATAtttgaagctgcggtcacaccagaGTGTGAATCTGCGAAAAGAgacaggattaaacaagatgattagacatttaaaaagcgagccattgctccatgttttaaatttctgtccagagatgtcatgttttgatcctcgattggtctcacgcagtaaAGTGATgtaatttcgcaggtcagagagCAACgaagcaacctgcgaaacttgacgcatgaccctgcgtttccggtgtGACGCATTCGCGGTTTTAAGACTTTGAGTCCCATCTTACACTCAACAAACTACAATTACtattgtataaatacagcactacaacaaaccatacaattttataatgatttgatcagctgtagtttaaaattatgcTGGGTTTTTTCTCTCCTGTAAGGGcctattatgcagtctctgtcgccatcttgtggatgggcaatgtcaaccgtctttggtctgttcaatgacaggctaatggtcTCTCAgaagttataaatatttaaaaataggcactaaccttataaataaactacatagttgcaatctaaacaactacattctcgactaaaaatgcttcaaaagtacattatgttctccaacagcagcaataactgtagagtgtcctctgcttgttgctgtatgtgggagGAGTACTACACAAGGGTGTAAAGGTAAAGAGCCTGGACAAGTGCTGTTACTTGCAGGTTATTGTGTGGCTATCAGATTCaagaatcagacagaactgttgtatagatacttttgcttcattcattcattttccttcagctaagtttcttatttatcaggggttgccacagcggaatgaaccgccaactattcaggcatatcatttacacagcggatgcccttccagccgcaacccagttctgggaataCTTTAACTTTTGGGATGAAATATGATCTGGACAGCTTTTATGAAATTCAGTCAACGATGGCACATAAGTTAAATACAACTTTAGATAAACTGGTGAAGGCTACAATATAATATGAGACGGATCCACATTCATCTTCGAAACGTGTTCACACTGTATAGAGCATTTTATCACGGTTTTAAACTACTCAAGGTCTGGGGAAGCTGGCTTTTCATTGTGTGCATGATTTATGTAGTGGTATCGTAATTACGAAATTAAAGATAGCTACGTTGCAGTTCTGTTCCTATATCTTATGAAAAGGTCAGTGTTGGGCAGTGTTTTTTCCTCCGAGTGGCTTATTCAGGCAAAATGAGGACAACTATTCACCTTAAAGTGATGATGACGAACTGTTTTGTTCGACGGTTGATGCTATTTGAACAGTTTTCCCTGCACAACACACAAGCGGCCCCAAAACCAGTGTCTTGCATCGAGAGGAAATGGTTGTACAATTtcttggtatttttaagatgagtctttagaaatgtttgtgtttttattttgtcatcAGTTTGAGACTAAATGCACAGGTGATGTTACTGTGATAATTGTGTAAATGATTTTCCTTTTCCCCTCTTGCTGTTGCTAACTAATAAATTAAAGCTCTATATTTTATAGTAATCCAactgtttatctttatttacCTGATGATTCTTTGATCGATTTCAGATTTGTGATAATGTTACATATTGTTTTCTGGAGAAGTAATGATGCATTTGCTGGAGTGAGAGGCAGAAAATGCTAATATAGATTTTACCTGGTGGTGCTATTTCCCAAGAAATGAGATTTTACAAGCTACGTATatgaatagttcatccaaaaattaccatttttttatttagtacctCTCACATTTCAGATACGCAAGACTTTCAATAAACACATAAGGTAGAACAATAACCACTTTAAAAGTACTAATTTATACTAAACAGGCTGCTGATGTGTTTTTTAACCGTACAACGGTACATGAATTATCTGTTGTGGGTCTGTATATACTAagtaatttcatttcattttcttgttggcttagtccctttattaattcggggtcgccacagcggaatgaaccgccaacttattcagcaagcttttttacgcagcggatgcccttccagccgcaatacTAAGTAATATAAACCAATATTAGTGTACTAAGTTTCTACAGCTATACATGGCACTGTACATTAGGCCTATACTATTGTtacccgcttgttaagtggtgacgtgttgatgacatgtaatactgtttccgggtccaagtcaccactcatttgagttgagaaatcattcgtttatgataacattttattcatatcacacattaaagttaactTTTTATAAAGTCATAATGTAActtacacaacaatctctgggcttgctgcatcataaataccaaaattttaacaatttataataaaatgaattactttctggccattggatattaggcatggacatatatattgcgatcgtgattttcgcaAGTATTAAAtctctttgtaaacgtttataattaccatttcacgggtctccccattcagttgaatagagcgcttggacccgaaaGCCGCTTTCTCCTCATACACAAAGTTGTTATAGGCGaatactgtaatatatacagAATAATATAGGCTAgtatttaattagttttgttgtaattattataattttttttatataaaaaaaaccaaTACTGTGCCGAATCGAACATAGACTGTAAAAGGGTGATCCCATCTAGTAGTTTACGCGACACATCGATG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function
GO:0038191 neuropilin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050513-2 Enables neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; forebrain neural keel; hypochord; neural plate; and presumptive telencephalon. Orthologous to human SEMA3F (semaphorin 3F).

Ensembl:

ensembl_id ENSDART00000188513

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008835 lncRNA downstream 6000 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008834 lncRNA downstream 870416 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008833 lncRNA downstream 1088728 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 1192197 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 1221619 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008836 lncRNA upstream 2900 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 4027 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 88721 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008837 lncRNA upstream 88721 35664551 ~ 35741441 (-) False XLOC_004257
TCONS_00008838 lncRNA upstream 144618 35720448 ~ 35741436 (-) False XLOC_004257
TCONS_00008117 mRNA downstream 275649 35162684 ~ 35171768 (-) False XLOC_004253
TCONS_00008118 mRNA downstream 276255 35162825 ~ 35171162 (-) True XLOC_004253
TCONS_00008116 mRNA downstream 663479 34779610 ~ 34783938 (-) False XLOC_004252
TCONS_00008115 mRNA downstream 663479 34779610 ~ 34783938 (-) True XLOC_004252
TCONS_00008114 mRNA downstream 726787 34650127 ~ 34720630 (-) True XLOC_004251
TCONS_00008125 mRNA upstream 169088 35744918 ~ 35756468 (-) True XLOC_004258
TCONS_00008126 mRNA upstream 183822 35759652 ~ 35763323 (-) True XLOC_004259
TCONS_00008127 mRNA upstream 201499 35777329 ~ 36020005 (-) False XLOC_004260
TCONS_00008128 mRNA upstream 202521 35778351 ~ 35970966 (-) False XLOC_004260
TCONS_00008129 mRNA upstream 202521 35778351 ~ 36001495 (-) False XLOC_004260
TCONS_00008119 other downstream 222278 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 980904 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 1091755 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 1481145 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 2076050 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 1723541 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 2599241 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 3372157 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 3514045 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 4606851 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

//