RNA id: TCONS_00008847


Basic Information

Item Value
RNA id TCONS_00008847
length 1393
lncRNA type intronic
GC content 0.42
exon number 2
gene id XLOC_004282
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37475513 ~ 37476968 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgggtttagggttagggtaggtgtagatggCATTGATAAACACAACAGGTTAGTgaaaggttgggtttagggttagggtaggtgtagatgaCATTGATAAACAACAGGTTAgtgtaaggttgggtttagggttgggataggTGAAATAGGCATTATTATATCAATAGGTTTCTgtggggttgggtttaggtttggggcaggtgtagacgttaacaaaacaaaaaggctaCTAtgaggttgagtttagggttgcattaggtgtagatgttaatataaATTAACAGGTTACTgtggggttgggtttagggttgtggtaggtgtagacattcataGAACAAAATAGgttggactccatgtcatgtacaagacattaaataaatgaaaattgcaGGAGGTTTGCCCACTTTTGGAGCTGTCTCTGACCTCCGTTTATACCCTTCTGAATTTTTCCAATATGATGCATCCCTAATCAGCAAAAATAAAGGCCTGCAAAATTAAAGCAGGGGATAAAATCTCCaactgtttgtttgcttttttaatgtcagTGTTACTATATTTGGAAACTCCGCATTCCAGTTAATCAACCCAAATGCCCAGATATTAATTATATTGTGGACACTTGTTTACTCATTAAGTGGTGCTTGTCAGCATGCATATGACATATAATTATCTCATTACGGCTAATAGTATGACCGTCCTGTAGAGCTGTGGTGCTGTAAGGGGTGAAGTGTCTGGGATGTAATCTAAATGCTTCACCGCTGTGCCTTCACACTTACCCACAGGTGGCTGGAGCAAATGTGCTGTAATTTGCTTGGGATataagtgtctgctaaatgacaaacAGCCAGATGAGCATATGCTACCATCCAGCGTTGCAGCTTTCTTATTAGACTTTCTCTGGCTGTCAGGAGTCAGATATATTTGGGTTGAGAGACCAGTGCTAGAAGGTGTAGTCAAGATCTGGGCACTCAGGTAATCAGAGAGCATTATGGGCCGTGTGAAGCCGCTGTTCAGGGCAACAGCTTCACACGGCACTTACTTCATTACTGATAACATCTGATATGGTCTGCGgtctgtattgtgtgtgtgtgtgtgtatgtgtgttgtctGTCACAGAGCGTCTGTGCGATTTCATTTTCAAGCGACTGATGCACAGCGACACAAGCCGTAAATAAAGAGCGCAAATACATGACCCTGCCCTGCATCGGCCCTGAGAGGCAAAAACAGCGCCTGCTTAATCACTGATGACAGCCTGTTATCCTGCAGCGACACACATGTACTGGaccaattgtgtgtgtgtgtgtatatatatatatgtgtgtgtgtgtgtgtgtgagtaaggctgagtaattaacttttatttttgcagttttttttggtCAAAGAAGTTAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008173 lncRNA downstream 177416 37297501 ~ 37298097 (-) True XLOC_004278
TCONS_00008846 lncRNA downstream 379979 37085620 ~ 37095534 (-) True XLOC_004276
TCONS_00008171 lncRNA downstream 430974 37038420 ~ 37044539 (-) False XLOC_004275
TCONS_00008845 lncRNA downstream 431593 37040376 ~ 37043920 (-) True XLOC_004275
TCONS_00008170 lncRNA downstream 460006 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008487 lncRNA upstream 116040 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008848 lncRNA upstream 124036 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008849 lncRNA upstream 124036 37601004 ~ 37603961 (-) False XLOC_004283
TCONS_00008181 lncRNA upstream 124036 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008488 lncRNA upstream 136579 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008177 mRNA downstream 50106 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008176 mRNA downstream 64021 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008175 mRNA downstream 116097 37310881 ~ 37359416 (-) False XLOC_004280
TCONS_00008172 mRNA downstream 354559 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008167 mRNA downstream 511525 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008180 mRNA upstream 32134 37509102 ~ 37589293 (-) True XLOC_004281
TCONS_00008182 mRNA upstream 206310 37683278 ~ 37693019 (-) False XLOC_004285
TCONS_00008183 mRNA upstream 208625 37685593 ~ 37691449 (-) False XLOC_004285
TCONS_00008185 mRNA upstream 231416 37708384 ~ 37717709 (-) False XLOC_004286
TCONS_00008186 mRNA upstream 231873 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008174 other downstream 176028 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2250374 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3009000 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3119851 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3509241 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 698103 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1471019 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1612907 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2705713 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 3201245 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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