RNA id: TCONS_00008846


Basic Information

Item Value
RNA id TCONS_00008846
length 661
lncRNA type read_through
GC content 0.35
exon number 2
gene id XLOC_004276
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37085620 ~ 37095534 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATGTCTGTCAAACATAGTTCTGAGtgctggACACAatgtagtaagtcatccaggAAACCAATGCATACTGTACGTTTGGATAAGCTACATAAAAAGGTATAACAGGTTTCAGAGTATTGGTGCTcattattaccaaaaaaaaatgttaaaaaaagaccTAATTTCAGTAGAAAAATATTGAAGGTAGCTTATTAACTGTCATAAAACTACaagattgatgttttttttttttttatgagaatGATCATGATTTTAACCGATAAGCTCTGTAGTAATCTTAAGTGTCCTGCTCCTAGGAGGGAAAATgtcctggaagtttctagtgatTATGAAGACCCtggtttggccagaggagaaatggtcgtaccCAACTGAGACTGGTTTATCTtaaggtttagtttttttttctttcacttttgtcaCTTGAAGTTTGTTTCTCGCCTCTTGGTTTGAGAGTTGTCGAGTTGTGCATcattggatttgctcttcaatgtttggactttcagaagtgaaaataaaccacacagaactgaagtaaactgaactaaaactctgaaaactgacctGACACTGtctcagtttactagaacttttacgttaagctgttttgacacaatcttgaaaaagtttaattcaattcagctttatttgtatagcgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008171 lncRNA downstream 41081 37038420 ~ 37044539 (-) False XLOC_004275
TCONS_00008845 lncRNA downstream 41700 37040376 ~ 37043920 (-) True XLOC_004275
TCONS_00008170 lncRNA downstream 70113 37011436 ~ 37015507 (-) False XLOC_004274
TCONS_00008169 lncRNA downstream 70872 37010161 ~ 37014748 (-) False XLOC_004274
TCONS_00008844 lncRNA downstream 70893 37013073 ~ 37014727 (-) True XLOC_004274
TCONS_00008173 lncRNA upstream 201967 37297501 ~ 37298097 (-) True XLOC_004278
TCONS_00008847 lncRNA upstream 379979 37475513 ~ 37476968 (-) True XLOC_004282
TCONS_00008487 lncRNA upstream 497474 37593008 ~ 37603964 (-) False XLOC_004283
TCONS_00008848 lncRNA upstream 505470 37601004 ~ 37603955 (-) False XLOC_004283
TCONS_00008849 lncRNA upstream 505470 37601004 ~ 37603961 (-) False XLOC_004283
TCONS_00008167 mRNA downstream 121632 36793550 ~ 36963988 (-) False XLOC_004273
TCONS_00008166 mRNA downstream 128493 36793473 ~ 36957127 (-) False XLOC_004273
TCONS_00008164 mRNA downstream 319786 36688794 ~ 36765834 (-) False XLOC_004272
TCONS_00008165 mRNA downstream 320244 36691801 ~ 36765376 (-) True XLOC_004272
TCONS_00008160 mRNA downstream 611314 36452516 ~ 36474306 (-) True XLOC_004268
TCONS_00008172 mRNA upstream 10106 37105640 ~ 37120954 (-) True XLOC_004277
TCONS_00008175 mRNA upstream 215347 37310881 ~ 37359416 (-) False XLOC_004280
TCONS_00008176 mRNA upstream 215347 37310881 ~ 37411492 (-) False XLOC_004280
TCONS_00008177 mRNA upstream 217974 37313508 ~ 37425407 (-) True XLOC_004280
TCONS_00008178 mRNA upstream 336159 37431693 ~ 37509001 (-) False XLOC_004281
TCONS_00008119 other downstream 1860481 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 2619107 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 2729958 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3119348 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 3714253 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008174 other upstream 203837 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 1079537 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1852453 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1994341 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 3087147 40182681 ~ 40182796 (-) True XLOC_004319

Expression Profile

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