RNA id: TCONS_00008191


Basic Information

Item Value
RNA id TCONS_00008191
length 1912
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_004291
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38033115 ~ 38083473 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAATTATTCACTCCAAACTCGCACTTTTGAAAAGCACCCAGCGCTTAAATTGTGAATTTTCCTCAACTTTTTTTCTAGGTTAATAAACATCAACATGAACCCCGAGAGAAAAGACTCCTGCAACTTTTAATTCCAGCACAGGAAGCGTCGTTTGCTTAGACGCTACAATGAGATGGTCTGAATGTAggttatcatcatcatcagacgCACTGGAGCCCCCTCGAGCGCTCCCGAAATTAATGTCAGAATGACGAATATGATGAAGGGCTGCGCTGAATATTTCATGTATGACCCATATGAGGGGAAGGAGAGAGAGGTAGAGATGCTGGAGACCGAGCTGTGCTGATGCTGCCGACAGACTCACTGAGGAAGGGTCTTTTTTTTCCTTCCACGCGCGGATTATTACTGCTCTGCACCGCTTGAAGATCCAGGGAAGCACCCGAGGAGAATCGGAAGAAACCGAAGCCCAGACCCCGAAAAGTGCTGATTCCGAAACACCACCCAATCGGTCAGGGCGATGATGGTGCCCTCGGCCCATGAGTTTCATTGGCAGAGCCTGGCGAGTCTTTCCAGTGCACGCGTCTATCACTCGTTGGCTGATGTGGGTGGGCAGCTGTATTTGGTTGGTGGTTGCGATGCTTCGGGGCAGCCCACCAGCGCTCTGGAGCTGTACTCGCCCGAGGTGGACCGCTGGCTCAGTCTTCCTCCAATGCCCACGCCGAGAGCCGGGGCTGCGGTGGCAGTTTTGGGGAAGCAGCTGCTGGTGGTCGGTGGGATGGGGAAGGAACAGCGCCCTCTGAAGGCCGTGGAGGTTTACAACACAGATGAAGGGAAATGGAGGAAGAGGTGCTCGCTCAGAGAGGCGTCTATGGGGGTTTCTGTCACCGTTAAAGACGGCAGAGCTCTGGCTGTTGGGGGAATGGGACCAGACCTCCTGCCCAGGAGTGTGCTTCAGCAGTACGACCTTCGCAAGGACGTCTGGGCGCTCCTTCCAGCAATGCCCACCCCGCGCTACGATACCAGCATCTGCCTACTGGGCTCCAAGATCTACGTGGCAGGTGGACGTCAGTGTAAGCGTTTAGTCAAGGCGTTTGAAGTCTTCGACATGGAAAACCGCACCTGGTCCTCTTTACCCAGCCTGCCTTGCAAAAGATCTTATTCTGGGGTCTTATGGGACAGCGCTGGGTGTCTCTGCTGGTTAGGAGGACTCAGACAAGGAGGAATACACCAAAGCTCAAAGTTTACAAAGAATGTTAACATCTTCGACACCAACAAAGGAGTTTGGCTGAAATCAGAGGACACCGTACCCTTGAAGACAAAGCGGGCAGACTTTGCTGCAGCCATAGTGCGAGGCAGAATGATCGTGGCGGGAGGTCTAGGCCATCAGCCATCAGTGCTGGACACTGTTGAAGCTTTTCATCCCGAAAAAAGGAAATGGGAAAGGCTGTCGCCCATGGCCACGCCGCGCTGCTCTGCCTCCAGCATCGTGATCCGGGATCGCCTGTTGGTAGTGGGAGGTGTCAATCAAGTCCCAAGCTCCGCCCATGAGATTCTATATGTTAAAGAGGAAGAGATTCTTTAACCACTGAACTACTTTAGGTTTACGCTGGGAGAAAAAAAAGGTGGCCTTCAATGATCTAGTAAAACAAATGTTTATACTAAAGGTGCGGTTACAAGTAACATTGCTCAGATAAATTCATCGATTCCAGTATGATTCTACACAGGACAAAAATGAATTTAGAccctgtccacacaaacacgggtatttaacccttgtgtaatGTTCAAATTAGGTAAAGTAAGACACTAAAGGTTTATATTTATTCCACCTTTCCTAGACAtgagtcacaaagtgctttacaattaAAGAAAACCAGAAAAAGTACACATATAAATTAAAGAAaacataa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120810-3 Orthologous to human KLHDC8A (kelch domain containing 8A).

Ensembl:

ensembl_id ENSDART00000086516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008852 lncRNA downstream 45557 37984951 ~ 37987558 (-) True XLOC_004290
TCONS_00008850 lncRNA downstream 205642 37780578 ~ 37827473 (-) False XLOC_004287
TCONS_00008851 lncRNA downstream 205642 37803780 ~ 37827473 (-) True XLOC_004287
TCONS_00008184 lncRNA downstream 340411 37687643 ~ 37692704 (-) True XLOC_004285
TCONS_00008488 lncRNA downstream 418577 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008853 lncRNA upstream 1475 38084872 ~ 38087013 (-) True XLOC_004293
TCONS_00008855 lncRNA upstream 66492 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008854 lncRNA upstream 66492 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008856 lncRNA upstream 66492 38149889 ~ 38190452 (-) False XLOC_004294
TCONS_00008857 lncRNA upstream 66492 38149889 ~ 38191029 (-) False XLOC_004294
TCONS_00008189 mRNA downstream 35696 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008190 mRNA downstream 37614 37949923 ~ 37995501 (-) True XLOC_004289
TCONS_00008188 mRNA downstream 152623 37848705 ~ 37880492 (-) True XLOC_004288
TCONS_00008187 mRNA downstream 312849 37717556 ~ 37720266 (-) True XLOC_004286
TCONS_00008186 mRNA downstream 313091 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008195 mRNA upstream 387148 38470545 ~ 38492564 (-) False XLOC_004296
TCONS_00008197 mRNA upstream 396654 38480051 ~ 38492269 (-) True XLOC_004296
TCONS_00008198 mRNA upstream 421760 38505157 ~ 38513978 (-) False XLOC_004297
TCONS_00008199 mRNA upstream 425774 38509171 ~ 38510469 (-) True XLOC_004297
TCONS_00008200 mRNA upstream 433858 38517255 ~ 38533505 (-) True XLOC_004298
TCONS_00008174 other downstream 733630 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2807976 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3566602 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3677453 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 4066843 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 91674 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 864590 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1006478 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2099284 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2594816 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_10025743_10034143.mRNA True 1165 mRNA 0.54 5 CI01000306 10025693 ~ 10034143 (-)