RNA id: TCONS_00008188


Basic Information

Item Value
RNA id TCONS_00008188
length 1553
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_004288
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37848705 ~ 37880492 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACCAACGGTACCGGCATATGAGCCGCTCCTCTTTTTTTCTGCACATACTAAACCAGGCTGGACGTCCAGTGCATGTTCAAAACAAAACCTCCAGAACACAGAACGCTTAATATACACATCCAATACTTGAAGATTCAGAAAGTTTAATGTCGGGCATTAATAGGCAGATAAATCATATGATGGAGACGGAGATCCACGTGCCTGTAGGCTCACCGACGATAAGAAAATTTCAGATATTCGTTGACGAGCACAATGTGACGGAAGGGGCGATGAAGCTGATTAAAGAGCTCAGACCCGGCTGGGACCCGAACCTGATCCGCACTAAGCTTTTCACAGATGGCACCACTAACAAGCTGGTGGGCTGTTATGTGGAGGATTGCGTAGAGGACGTGGTTCTGGTCCGGGTGTACGGCAACAAGACAGAGCTGATCGTGGACCGGGACAATGAACTGAAGAGCTTTCAGGTTCTGCATGCCAACGGTTGTGCGCCCAGACTTTACTGCACCTTCCAGAATGGCATCTGCTACGAGTTCATGCAAGGACGCGCTCTGGATACCCAAGACGTCAGGGACCCCGTGCTGCTCAGACTGATCGCCCGTGAAATGGCTCGCATTCACGCCATCCACGCACACAACGGATGCATCCCCAAACCCAACCTGTGGATCAAAATGCGCAAGTACTTCTCACTAGTGGCCACAGAGTTCACAGAGCAAGCCTCCAACATCAGAATTCAGCAAGAAGTGCCCAGCCAGGAAGTGCTGGAGCAGGAAATGATGTGGATGAAGGAGCACCTGTCTCAGCTGGGCTCGCCTGTGGTGCTCTGTCACAATGACCTGCTCTGCAAGAACATCATTCACAATGCAAAAGAAGGTCATGTTCGATTTATCGACTATGAATACTCAAGTTACAATTACCAAGCATTTGACATTGGAAACCATTTCAATGAATTTGCAGGAATGAGTGAACCAGACTATAACCTTTACCCCAGTAGAGAGATGCAGCTGGACTGGTTGCAAACGTACCTGCAGGCCTACAAGCTCTTCACCAAGAAAGGTGAAGATGTGAGCGAGCGTGAACTGGAGACGCTCTACGTACAAGTCAACAAGTTTGCTCTGGCCTCTCATTTCTTCTGGGGTTTCTGGGCCCTGATCCAAGCCAAGTACTCAACCATCGAGTTTGACTTCCTCGGCTATGCAGTGCTACGATTCAATCAGTACTTCAAGACCAAACCTGCAGTAATGGCCCTGGAGATTCCCAAATGATTCTTCAAGACTGAGAGGACATCGCTGCTATCGGTTGGCCTCATCTTTGACCATTTGACCACTGATTCAGAGGCCTTTCCGGTCAGGGGAGGGAATAGGGTACTGCAGGGGGGAGCACTAGCACCTCTTTTAATTGGTTGGCAAATTGTCTACCAAATCATAGCTCCACAAATTCTTTATTCCTTCTCATTTCTCTTTGGGATTTCACTCCTAGTTGATCAAAATTCCCAAGAAGTGAgtgcatttttatgttttaaatacactttatttattaactgttatgGGGCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-135 Predicted to enable kinase activity. Predicted to act upstream of or within phosphorylation. Orthologous to human ETNK2 (ethanolamine kinase 2).

Ensembl:

ensembl_id ENSDART00000102868

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008850 lncRNA downstream 21232 37780578 ~ 37827473 (-) False XLOC_004287
TCONS_00008851 lncRNA downstream 21232 37803780 ~ 37827473 (-) True XLOC_004287
TCONS_00008184 lncRNA downstream 156001 37687643 ~ 37692704 (-) True XLOC_004285
TCONS_00008488 lncRNA downstream 234167 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008181 lncRNA downstream 244724 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008852 lncRNA upstream 104459 37984951 ~ 37987558 (-) True XLOC_004290
TCONS_00008192 lncRNA upstream 159472 38039964 ~ 38041422 (-) True XLOC_004292
TCONS_00008853 lncRNA upstream 204380 38084872 ~ 38087013 (-) True XLOC_004293
TCONS_00008855 lncRNA upstream 269397 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008854 lncRNA upstream 269397 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008187 mRNA downstream 128439 37717556 ~ 37720266 (-) True XLOC_004286
TCONS_00008186 mRNA downstream 128681 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008185 mRNA downstream 130996 37708384 ~ 37717709 (-) False XLOC_004286
TCONS_00008182 mRNA downstream 155686 37683278 ~ 37693019 (-) False XLOC_004285
TCONS_00008183 mRNA downstream 157256 37685593 ~ 37691449 (-) False XLOC_004285
TCONS_00008189 mRNA upstream 68347 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008190 mRNA upstream 69431 37949923 ~ 37995501 (-) True XLOC_004289
TCONS_00008191 mRNA upstream 152623 38033115 ~ 38083397 (-) False XLOC_004291
TCONS_00008193 mRNA upstream 170129 38050621 ~ 38083473 (-) True XLOC_004291
TCONS_00008195 mRNA upstream 590053 38470545 ~ 38492564 (-) False XLOC_004296
TCONS_00008174 other downstream 549220 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2623566 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3382192 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3493043 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3882433 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 294579 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 1067495 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1209383 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2302189 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2797721 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_09944940_09958459.mRNA True 2101 mRNA 0.45 8 CI01000306 9944631 ~ 9959168 (-)
bowfin (Amia calva) AMCG00013924 True 1644 mRNA 0.63 8 CM030125.1 47123708 ~ 47132176 (+)