RNA id: TCONS_00008195


Basic Information

Item Value
RNA id TCONS_00008195
length 3317
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_004296
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38470545 ~ 38492564 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTATATAATATTTCAATGCCATCCGGATTTGGATTCTGAATCTCTTCTCACCCAGACGttttaatatgttaattatttttacCATGGTCACATATTTAAATGGGACAGTCCATCATAAGATGATCTGCATGCTTTTACTTCAGTCTGCATTTACTGCATTTCTCAAGCTGCTGAACATACATCTGGAGGACATTAACGCTGTTCAAACTGAATAGACCAGGTTTCTTACAGATTCATAAAATCTCAGCCTTTGTTCTGCAGTTTTATTGCGCGCTGCTACAGTGAAAGTGTTTAATCTGCTGGGCTTGTTGCTTCCTGTATTGCATTGTTATGGTTGCAGCTAAAATATGAGTAACTTAGCAACGATTGAGATACTTTATCGTTTCTCTTTTCCCTTTCTCGTTGTAAATACGACAAGAAATCGCTTTAAATAGTCGAATTTACATCAACTACTGTTAGTTCAATGGGTCTAAAGTTTGCTAAGACTCCGTTAGCTAGCGGACTAGCACGCTATGCTAGCTGACCACCAAATATCTTTACACGatgtaaacatacaaaaaaacggacagcattttttattttattttatttcttttgggGAATCAATCTGTTAAACTCCACACGAGAAACGACTCTGGAGAGCAGAAATCTTTTCAGCCTCCTTCAAGATATTTTTAGGAATATGCCGTGAAATGTCAGCCAGCCTGTGAGCGTGATCAGGATCCTGAAGGTATCGTATCGAGAAGGACATGGACAGCTCTGTGACACTCTGGCAGTTCCTGCTGCAGCTCCTGCTGGACCCAGGGAATGAGCAGCTCATCTGCTGGACCAATGAGGATGGAGAGTTCAAGCTGCTGCAGGCGGAAGAAGTGGCCAGATTATGGGGAGCCCGCAAGAACAAACCCAGCATGAACTACGACAAGCTCAGCCGGGCCCTGCGCTACTACTATGACAAGAACATCATCAAAAAAGTCAACGGCCAGAAGTTTGTCTATCGTTTCGTGTCGTACCCTGACATCCTAAAAGGAGACGTCATGGCCAGGGCCGAGGGTGCAGACGGAGGCTCGAACGGCCCTCTGCCTCTCTCGGACCAACCAACAAACATCTCCAGAGATAAAGACAACAAATCCATCATAGAGCGGGGAGCCGGAACACTGGCTCAGTCTAAATCATCCAGCCGGAATGAATACATCCACTCTGGCCTTTATACATCCTTCACTTTGACCTCTTTGCAATCGGGAACGCAACTTTTTAAAGCCACCAAGAATGAAAACCCAGGAGAAAAGCTAATGGAGAAAAAAAGCACCCAGGATTCACCCCAGCCGTTATCCACAGTTATCAAATTTGGGACCATGCCACAAAAAAGCACCACTGCGTCTGCTATAGGAAGACCTGAACTTCCAGAACAGTCCGCTCAATCACCTCTGGCTGATCCCGAATCCAAACAGACCTCCATCTCCAATACTGTGTGTGCGTTTGTGGAGAAAACGTCTTCAGAGAACGCCATGACAGGCTTCCCTGTGTCCAGCATCTCTCCATCAGTGCTCCATCATTCCTCCCAGTCTCCCTCTTCTTCTCCCATGACAGATTCACAGCAGCTGGTGATTGACAGTGAGATTGAGTCTCTTTCCTCACAGCCTTCAGAGTTACAGCTGCAGGTTCAGCCGTTCTCTGTTTCTAAGGCCACGGTATCATCTTGTGTCCTGCCCGAATCTCCACCCCGCAATATCAGCTCCAAATCGAAGAAACCCAAAGGCCTTGAGTTAATGCCCACGCTGGTGGTTACCAGCTCTGACCTGAGCCCTCTCAATCTGTCCAGCCCGTCCCTCCCGACGGCGTCTCTCACCCCAGCCTTCCTGCAGACGCCGCTGCTGCTCACGCCCAGTCCACTTCTGTCGAACATTCATTTCTGGAGCACGCTGAGTCCTGTGGCGCCGCTCAGTCCCGCAAGGAGACAGGGAGCACACAACCTCTTCCAGTTTCCTTCTGTCCTGAGCTCCACACAGTTCACTGTTCCCATCTATAATTTAGACGGCACCAACACACCAGGCCCTCTCTCCCCCGACCCACAGAAGACATAAGAGGAGCACCGAGGCCTTCACACTTCATCTCTGCCTCATGTTCTTGATTGATAAACGCAGATTAACCTCATTCTGTTCACCTGATCCGGCCCTCTTCAGGTAACCAAGATTTATGACCATCGTTTAAGCATCAAGAGCATCCGCTTGACTCTTGAACTTTGCGATGCCACATACACTTTAACTTCGGATGTATATCAAGCCATCAGAATGTGTCTGCGGGACACTTTAAAACTGTCCTTTTTTGATTTTCTCCACTGCGACTGAAGCAGATGGATATTCAGCTCCATCTCTTGCCAAAACGGGCATCTTGTGCGTGTTTCACCATTGTTTGATCGGGATCCTAATTGAATTTAGTTTCTTGTGGAGCTTAAGACTTCAATTAGACTCTGAAGAGGTTCCCACATGACGTCAACAGCCTGTTTTTGCATCAGATAAAGAGCGATCGCTGTATATAATCCAGCAAGTTCACCTCGTCTCAACTCATGTTTGCCTTTTGTTTGAGAAGTCCTCAAACAAGCCTGCCTTGCCAAGCCAAACCGCCCCTTTGCCTTGTGATTTTGTTAATGGCGACCTCTGTTTTATCTTGTACCTTTCCTCATGCTGCACTTATACTGCCATGTAGTTAACGTGTTTTGTCACAATAACCACACGTACAGCACTTGATGAAAACAAGCTGCACTTATATAAAGGCTTTCGTGCCTACTTGTGTTTACTAGCCATCCAGAAATAGTCAAGGAGAGGGGTCGAAAATTACCTCATGTATATGGAAAAACTAAAAGGAAATCAAGCACGATTTGTTTCAGGGTTGTACACAAACGTTGGTTTATATGTGAACATTATAAAGGAACTCCGCACCAGCATTTTTTGTGAACACTTTGTGCTCCGTGTTGATTGGTTATAAGAGCTTTTGtggttcaatttttttttcttctgcatctAAGGTGCATCATGGTAAAGCTACACAAGTAGCTGGTGCGACGTTTTGACAACATTTTAATCTTAAAGAGCAGCTTGAACACAATTACTATGAAACAATCAGAATCAGCAGAAGTCGAGGTAATTAAAGTTCGTGTGAAATTAAAAGTTACTATATTTATTTTGCCAGCGCACGattttattctttaggtgaataattaattaatgcaagttaatccactgaaaaaaaagctttctGCGTTTGGAGTGGCGGTTCTTCTCTCTGACGAAAGTTTTACACAATAAATTTCAGCCACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko05202 Transcriptional misregulation in cancer
ko05166 Human T-cell leukemia virus 1 infection
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030716-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human ELK4 (ETS transcription factor ELK4).

Ensembl:

ensembl_id ENSDART00000102850

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008860 lncRNA downstream 44742 38339439 ~ 38425803 (-) True XLOC_004295
TCONS_00008859 lncRNA downstream 271658 38149889 ~ 38198887 (-) False XLOC_004294
TCONS_00008858 lncRNA downstream 279437 38149889 ~ 38191108 (-) False XLOC_004294
TCONS_00008857 lncRNA downstream 279516 38149889 ~ 38191029 (-) False XLOC_004294
TCONS_00008856 lncRNA downstream 280093 38149889 ~ 38190452 (-) False XLOC_004294
TCONS_00008489 lncRNA upstream 715620 39208184 ~ 39212765 (-) True XLOC_004311
TCONS_00008861 lncRNA upstream 811033 39303597 ~ 39305163 (-) True XLOC_004312
TCONS_00008214 lncRNA upstream 1145176 39637740 ~ 39645310 (-) True XLOC_004313
TCONS_00008862 lncRNA upstream 1968287 40460851 ~ 40462487 (-) True XLOC_004323
TCONS_00008230 lncRNA upstream 2144790 40637354 ~ 40647206 (-) False XLOC_004326
TCONS_00008193 mRNA downstream 387072 38050621 ~ 38083473 (-) True XLOC_004291
TCONS_00008191 mRNA downstream 387148 38033115 ~ 38083397 (-) False XLOC_004291
TCONS_00008189 mRNA downstream 473126 37948839 ~ 37997419 (-) False XLOC_004289
TCONS_00008190 mRNA downstream 475044 37949923 ~ 37995501 (-) True XLOC_004289
TCONS_00008188 mRNA downstream 590053 37848705 ~ 37880492 (-) True XLOC_004288
TCONS_00008198 mRNA upstream 12593 38505157 ~ 38513978 (-) False XLOC_004297
TCONS_00008199 mRNA upstream 16607 38509171 ~ 38510469 (-) True XLOC_004297
TCONS_00008200 mRNA upstream 24691 38517255 ~ 38533505 (-) True XLOC_004298
TCONS_00008201 mRNA upstream 47574 38540138 ~ 38554394 (-) True XLOC_004299
TCONS_00008202 mRNA upstream 401255 38893819 ~ 38899816 (-) True XLOC_004300
TCONS_00008194 other downstream 295395 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008174 other downstream 1171060 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 3245406 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 4004032 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 4114883 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008207 other upstream 455423 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 597311 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 1690117 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2185649 40678213 ~ 40696136 (-) True XLOC_004327
TCONS_00008244 other upstream 2585627 41078191 ~ 41084363 (-) True XLOC_004334

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_10262423_10269446.mRNA True 1254 mRNA 0.54 4 CI01000306 10262423 ~ 10269446 (-)