| Item | Value |
|---|---|
| RNA id | TCONS_00008859 |
| length | 10358 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 3 |
| gene id | XLOC_004294 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 38149889 ~ 38198887 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048731 | system development | biological_process |
| GO:0050877 | nervous system process | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048513 | animal organ development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0050953 | sensory perception of light stimulus | biological_process |
| GO:0002088 | lens development in camera-type eye | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0007600 | sensory perception | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0048880 | sensory system development | biological_process |
| GO:0007626 | locomotory behavior | biological_process |
| GO:0003008 | system process | biological_process |
| GO:0032501 | multicellular organismal process | biological_process |
| GO:0032502 | developmental process | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0007423 | sensory organ development | biological_process |
| GO:0150063 | visual system development | biological_process |
| GO:0034706 | sodium channel complex | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005212 | structural constituent of eye lens | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008853 | lncRNA | downstream | 62876 | 38084872 ~ 38087013 (-) | True | XLOC_004293 |
| TCONS_00008192 | lncRNA | downstream | 108467 | 38039964 ~ 38041422 (-) | True | XLOC_004292 |
| TCONS_00008852 | lncRNA | downstream | 162331 | 37984951 ~ 37987558 (-) | True | XLOC_004290 |
| TCONS_00008850 | lncRNA | downstream | 322416 | 37780578 ~ 37827473 (-) | False | XLOC_004287 |
| TCONS_00008860 | lncRNA | upstream | 140552 | 38339439 ~ 38425803 (-) | True | XLOC_004295 |
| TCONS_00008196 | lncRNA | upstream | 272921 | 38471808 ~ 38474353 (-) | False | XLOC_004296 |
| TCONS_00008489 | lncRNA | upstream | 1009297 | 39208184 ~ 39212765 (-) | True | XLOC_004311 |
| TCONS_00008861 | lncRNA | upstream | 1104710 | 39303597 ~ 39305163 (-) | True | XLOC_004312 |
| TCONS_00008214 | lncRNA | upstream | 1438853 | 39637740 ~ 39645310 (-) | True | XLOC_004313 |
| TCONS_00008193 | mRNA | downstream | 66416 | 38050621 ~ 38083473 (-) | True | XLOC_004291 |
| TCONS_00008191 | mRNA | downstream | 66492 | 38033115 ~ 38083397 (-) | False | XLOC_004291 |
| TCONS_00008189 | mRNA | downstream | 152470 | 37948839 ~ 37997419 (-) | False | XLOC_004289 |
| TCONS_00008190 | mRNA | downstream | 154388 | 37949923 ~ 37995501 (-) | True | XLOC_004289 |
| TCONS_00008188 | mRNA | downstream | 269397 | 37848705 ~ 37880492 (-) | True | XLOC_004288 |
| TCONS_00008195 | mRNA | upstream | 271658 | 38470545 ~ 38492564 (-) | False | XLOC_004296 |
| TCONS_00008197 | mRNA | upstream | 281164 | 38480051 ~ 38492269 (-) | True | XLOC_004296 |
| TCONS_00008198 | mRNA | upstream | 306270 | 38505157 ~ 38513978 (-) | False | XLOC_004297 |
| TCONS_00008199 | mRNA | upstream | 310284 | 38509171 ~ 38510469 (-) | True | XLOC_004297 |
| TCONS_00008200 | mRNA | upstream | 318368 | 38517255 ~ 38533505 (-) | True | XLOC_004298 |
| TCONS_00008174 | other | downstream | 850404 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008119 | other | downstream | 2924750 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008105 | other | downstream | 3683376 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008102 | other | downstream | 3794227 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008088 | other | downstream | 4183617 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008207 | other | upstream | 749100 | 38947987 ~ 38949751 (-) | True | XLOC_004305 |
| TCONS_00008210 | other | upstream | 890988 | 39089875 ~ 39089991 (-) | True | XLOC_004308 |
| TCONS_00008222 | other | upstream | 1983794 | 40182681 ~ 40182796 (-) | True | XLOC_004319 |
| TCONS_00008236 | other | upstream | 2479326 | 40678213 ~ 40696136 (-) | True | XLOC_004327 |
| TCONS_00008244 | other | upstream | 2879304 | 41078191 ~ 41084363 (-) | True | XLOC_004334 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU501192 | True | 13618 | lncRNA | 0.39 | 2 | CI01000306 | 10077983 ~ 10109617 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU367819 | False | 1795 | lncRNA | 0.46 | 1 | NC_047614.1 | 18904829 ~ 18906623 (+) |