G38845 (LOC103376870)


Basic Information

Item Value
gene id G38845
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3795081 ~ 3882418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU48417
tgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttctagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctgtcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatacacacacaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48417 True 444 lncRNA 0.45 2 3795081 3882418

Neighbor

gene id symbol gene type direction distance location
AMCG00012669 NA coding upstream 183906 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 317154 3469070 ~ 3477927 (+)
AMCG00012661 NA coding upstream 608658 3186010 ~ 3186423 (+)
AMCG00012660 NA coding upstream 610530 3184180 ~ 3184551 (+)
AMCG00012659 guca1a coding upstream 613179 3177398 ~ 3181902 (+)
AMCG00012675 LOC108428417 coding downstream 3720 3886138 ~ 3900561 (+)
AMCG00012679 trabd coding downstream 252170 4134588 ~ 4158381 (+)
AMCG00012680 NA coding downstream 279082 4161500 ~ 4183082 (+)
AMCG00012687 actr6,arp6 coding downstream 431464 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 438555 4320973 ~ 4329154 (+)
G38843 NA non-coding upstream 1307 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 22843 3770836 ~ 3772238 (+)
G38836 NA non-coding upstream 34978 3757717 ~ 3760103 (+)
G38824 NA non-coding upstream 50755 3739791 ~ 3744326 (+)
G38818 NA non-coding upstream 122367 3672474 ~ 3672714 (+)
G38882 NA non-coding downstream 79945 3962363 ~ 3962573 (+)
G38886 NA non-coding downstream 91947 3974365 ~ 3976617 (+)
G38964 NA non-coding downstream 634718 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 1066822 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 1155129 5037547 ~ 5074126 (+)
AMCG00012641 NA other upstream 2213693 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 2955815 778908 ~ 839266 (+)
AMCG00012681 NA other downstream 301457 4183875 ~ 4251594 (+)
G38954 NA other downstream 487895 4370313 ~ 4373574 (+)
G39297 NA other downstream 1669999 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1925428 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 2170730 6053148 ~ 6056832 (+)

Expression


Co-expression Network