AMCG00012686


Basic Information

Item Value
gene id AMCG00012686
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4320973 ~ 4329154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012686
CCGGTTTCGTGATGGCGGTCGATTTGACTCCGAGATTTAGAAGACTTAATAGCCAAGGCAGAAGTTTACGTGAAATTGTACAAACAGGCTTCTCCGGCCCCTTTCGTGCCACTCAGCTATGGAAGAACATCATCCACGCCCTGCAGACCCAGGTCGAAGTGAAGAAGCAAAGGATGCACCTGCGGATCCACAGTGACTGTTTCACCGGCTCGGACGCGGTCGATGTTGTCCTCAGCCATCTGATGCAGAATATCTACTTCAGCTCCAGTGAGATTTCCCGGCTGAAGGCGGCGCGCCTCTGCCAGGCTCTGATGGAGTCCAAAGTGTTCGAGCCCGTGGGCACCAAGCTTTTCCGCCAGCAGAAAGAGATGACATTTGAGGACACCAACAGCAGCCTGTACCGATTCCTGGACTGCGATGCTCTTCCAGGTTCAGCTAAACGTTGTTACACTGAGAACGTGTCACCTGAAGGGTTTAGTGGCAAAAAGCCTAAATTTCCCAGATTAGAGCAAATCACAACAATTTCCAACCCACTGGCCCTGGAGTCTTCAGACAGACGAATAGAGAAGCTGCTGAAAATGATAAACCTCCACCCAGCTTTGCCTTCAGACTCAGAATCTGGACACACTTCTAGCATATTGTCAAAAAGAGTCGTGGAGGACGTGTGGAAACAGCAGACTCTTTTACAGCTGCTGCAGATCCTTGACCTCCCTGTCCTGGATCGAATTTTGACAACACCTGTGAAGACTGAGCAGCAGAGAACAGTTCCGCTGTGTAATCAGGATGACCTTGTCATCTCCAATACTTGTGTGGACAGAGAGGTCACCCAGAGCCTAAACCTGCCCCAGTTGGACATGTGGCTCATGGCTGCCACTGACTGCCTGGAATATTTCCCAGACCAGCTGATAGTGATCACTGGGGAGCACTTATCTCAGCAGTGTGCCGATGAAAAGCAGAGGATGAATATGCAAAAGAGGCTGCTCTTTGATACCATCTCAAAATACTATAGTCAAGAAAGAGACCCACTTCTAACAGACCGCTATTTTGACATTCATATGGGCATCATGGAACTTTTTGAAAAGGACAAGGGACATCAAGCTTTTGAAGCCTCCCAGTTGTGTCTGAGACTGCTGGAGCCCAATGTGAGAGATGAACTGCGCAGACTGTTGGCATTCATGGCAGTGGCTGCAGAGCCTGAGGGATACAGGCTGCAGAAACAGACTCCAGTATCACTGATAGAGACAGTTACCAAGCAGCTTCAGACTTTACAACAAGGAAGAGATCCAGATACCACAGCTGCGTTCACATTCTGTCAGCAGTTGACAGTGGAGCAGTATGAAGAACAAAGGGAACTGGCAACAATGAAGCAGCTCCAGCAGCTAATCCAGGATCTAACTCAGAACACCACCCTCCctgtgaaagagaaaaaaaggctAATGAAGGAATTTGAGAAACATCACCCAGTGATCTTCTTAAAACATTTGTCCAGTGGATTCTAATGAAAAGATTTAACCAGACTGGAGGTGAATGGAGTTTtagtataaattaatatatgaatacactACAAAGGTACATTTAGGTTAAATGTAGGTTTCCAATACATAATTAGATATTAATACTGCTGGCTGTGATTTAAATTGTGCCTCTGTGATTGCGTTAATGCTTTCCTTCAAGGAAgtagtttaattttattgattttaagtaTAAAGGGtggcttttttaattaatggaattTTTTGCACTAGAAGTTGTCTTCACACTGGAAATTAACCTTTTATTGCAGTCCTGTTGAACAGCTGGTTGTAGCAGATGCTGAAAGCCATGGCCCAAAAATCTGTTGTCAACTATTGTATTTGCAGACAAAAAATCTCTAATTATTGACTAATGTAGAGACATGCGTGCCCGTGCTCCAGTTGGAAAACTACTTATGTTTTCACTTTTATGATACATGAACAAAACTTGATTATAAACTCAGGTATTATTTATAAGAACTAGCATGATGctcaacataatttaaatgcttttaaatgatttaaacgTGATAACACTAATATACCTTAAAATCGGTCTTCACTTCATTACACTAACCTTTTTAACTATCTCCTGGATAcacctaaaataaaatctaatttacataaaatacctgaaactGCCTATATTAGCTGTTTTTGGCAATATGTTCTAACACACCCTCACAATCTGTCACTATGTGTACAATGTATTCGTCTATTAGGTATAGTTCCATTCTTTATCTTTtgccattaataataatttgttaaaattaatggatttgaaaagtgtaattgtatgtgtattgtCATTATAAAACTTTAAGTCATTGTTTATCCAGTA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko04111 Cell cycle - yeast
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012686 True 2352 mRNA 0.42 8 4320973 4329154

Neighbor

gene id symbol gene type direction distance location
AMCG00012687 actr6,arp6 coding upstream 1374 4313882 ~ 4319599 (+)
AMCG00012680 NA coding upstream 137891 4161500 ~ 4183082 (+)
AMCG00012679 trabd coding upstream 162592 4134588 ~ 4158381 (+)
AMCG00012675 LOC108428417 coding upstream 420412 3886138 ~ 3900561 (+)
AMCG00012669 NA coding upstream 709798 3586384 ~ 3611175 (+)
AMCG00012685 scyl2,LOC106576457,LOC107597030 coding downstream 517 4329671 ~ 4348756 (+)
AMCG00012700 pah,LOC107744915,LOC107695873 coding downstream 209870 4539024 ~ 4577184 (+)
AMCG00012706 NA coding downstream 264938 4594092 ~ 4600032 (+)
AMCG00012697 NA coding downstream 292366 4621520 ~ 4623236 (+)
AMCG00012695 NA coding downstream 321144 4650298 ~ 4653916 (+)
G38886 NA non-coding upstream 344356 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 358400 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 438555 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 527199 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 548735 3770836 ~ 3772238 (+)
G38964 NA non-coding downstream 187982 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 620086 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 708393 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 1107679 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 1318620 5647774 ~ 5648107 (+)
AMCG00012681 NA other upstream 69379 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 2739585 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3481707 778908 ~ 839266 (+)
G38954 NA other downstream 41159 4370313 ~ 4373574 (+)
G39297 NA other downstream 1223263 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1478692 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 1723994 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 2147095 6476249 ~ 6517983 (+)

Expression


Co-expression Network