AMCG00012685 (scyl2,LOC106576457,LOC107597030)


Basic Information

Item Value
gene id AMCG00012685
gene name scyl2,LOC106576457,LOC107597030
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4329671 ~ 4348756 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012685
GCGGCGGTGGCGGTCTCATGTCGGAAGTGACGTAAAGCAGAGCAGGTAGAATTTGGTACGCTGGAAGATATGGAGGCTGTTGAGGGCTGCCACAAATGACGGGTTCCACTTTTAAACCTCTAAATTAGGATCAAGAAATCGTTGACACATTAGCCAGTACACAGGTGACGCGGCCAGACAGTTGGAAACCATGGAGTCAATGCTCAGTAAGCTGAAAAGCACGGTCACCAAGGTAACCGCAGATGTTACCAGTGCTGTGATGGGGAACCCTGTCACCAGGGAGTTTGAAGTTGGGCGGCACATTGCTAGTGGTGGACCAGGTCTGTGCTGGAGGATCTACAATGGCACCAAAAAGTCAACCAAGCAGgagGTAGCAGTCTTTGTCTTCGACAAGAAGGTAATAGACAAGTACCAGAAGTATGATAAAGACCAGATTGTAGATTCTCTAAAAAGAGGCGTTCAGCAATTAACAAGACTGAGGCATCCACGCCTGCTCACTGTGCAGCATCCTCTTGAAGAGTCACGGGACTCCTTAGCTTTCTGCACAGAACCTGTTTTTGCCAGTCTATCCAATGTTCTTGGGCAATGGGACAACCTGCCGAGCCCTGTCCCCGCAGATATTAAGGAGTATAAGCTTTATGACGTCGAAACCAAATATGGCCTCTTACAGATCTTTGAAGGATTGTCGTTTTTGCACAGTGGGGTGAAAATGGTCCATGGGAACCTGACTCCTGAGAATATCATTTTGAATAAAAGTGGGGCCTGGAAAATCATGGGATTCGATTTCAGTATTTCGTCACTGAACGCCTCGGAGCAGGAGCCAAAGTACTCATGCAAAGAGTGGGACCCCAACCTCCCCTCTCTATGCCTCCCTAACCCAGAGTACCTGGCACCAGAATACATCCTGTCTGTCAGCTGTGAATCAGTCAGTGACATGTATTCCATGGGAGTTGTCATGCATGCAGTATTTAATGAAGGAAAGCCCATCTTTGAAGTTAACAAGCACgacattttcaaaagcttcaGCAGACAGCTGGATCAGCTAAGTCGCCTCAGCCCCAGTGTTCTGTCCAAGATTCCCGAGGAGGTGCGTGATCATGTTAAGATGCTGCTCAATGTCACCCCCACCGTGAGGCCCGATGCAGATCAGATGACAAAGGCAAGTGGAATTCCCTACTTTGACGATGTTGGCGCGATGACACTACAGTACTTTGACTCCTTATTCCAAAGAGACAACCTTCAGAAATCACAGTTTTACAAGGGCCTTCCAAAGATCCTTCCGAAATTGCCCAAGCGTGTGGTAGTGTACCGCATCCTACCAGCCCTGACCTCGGAGTTTGTCAATCCGGACATGGTTCCTTTCGTTCTGCCGAATGTCCTGCTGATAGCTGAGGAGTGCACCAAAGAGGAGTATATCAAACTTATCCTGCCCGACCTCACCCCTGTCTTCAAACAGCAGGAACCCGTGCAGGCTAGCAATATGATTCTGTTAATCTTTCTGCAAAAAATGGATTTGCTGCTGACTAAAACACCTGCAGATGACATTAAGAACTGTGTCCTCCCGATGGTCTATAGAGCTTTGGAAGCACCGTCCATTCAGATTCAGGAACTCTGCCTAAACATCATCCCTACTTTTGCCAACTTGATTGATTACCCCTCCATGAAGAACTCCTTAATCCCCCGCATTAAAAATGCCTGTTTACAGACTTCATCTCTGGCAGTCCGTGTAAATTCACTGGTTTGTTTGGGCAAGATATTAGAGTACCTCGATAAATGGTACGTGATTGATGAAATCCTGCCGTTCTTACAGCAGATCCCATCCAGGGAACCAGCAGTGCTTATGGGAGTTTTagGTATCTACAAGTGCACGTTTACCCACAAAAAGCTGGGCATTCCCAAAGAACATCTGGCTGGGAAAGTACTGCCCCACCTTGTTTCTCTCAGTATAGACAACAACCTCAATCTCAATCAGTTCAACTCCTTCATGGCTGTTATTAAAGACATGTTGAATCGAATGGAGGCAGAGCACAAGACAAAACTGGAGCAGTTACATGTAATGCAGGAACAGCAAAGGGGTTTGGATATCTCTAATCAGTTAAACAAATCGGAGGAGACAAAGACAAGCCCAGGAAACCAGATTGACAGGATGTTCGTGGTGGACATGGTGACTGGCGGAGTCAACGGGAAAGAGAACGGTCCTTCTGTGACGGTCCCGCAGCCATCCAGAGCTTCTCTAACTCTGGAGGAAAAACAGCGTCTCGCTAAAGAGCAAGAGCAGGCGGCAAAACTGAGGACTCAGCAGCCTCTCGCACCGCAGAACGTGAAACCCACAGCCTCGGCAAAGCAGACCAAGGACCTGACGAGCACCCTTCTGGACAGCATGTCGTCCATGGGCGGCCTGTCTCTCAGTGCAACCAAACCAGCCTCCACACAAGGCTTCTCCTCGGGGCCTCCCAGGGGCAACATGGGCACCATGGCAGCCATGAGCAACGGCTTTGGCACTGGCCTGAGCTTCCAGTCTTCGGGCATGAACCTGGGAATGTGCCCCCCAGCCCAGACCATGTACGGGGGATTggccaccaccaccagcacaCCCAACTTCACTTCGCTGGGCGGGTTGAGTCAGCCGGGACCCATGGGCATCCCTCAGCAGAGTAAACCCACCAACCTATCCGCTCTGGACTCCCTCTTCACACCACAGAAACCCAAAGTTAGCCTCAACCAAATGGCCCCCAAACCTGCCCCCGTGACCGCCACTGCCACTTCCAGTCCGTGGTTGAACCAGCTTGTACAGCCCCAGGGCGCCCAAGGCATGAACATGGCCATGGCTCCGGCCCAACCCAACATGCTGGCACAGGGAGGCTTTGGGATGCAGGCCAACCCTTTCTTCAATCCCCAGAACTTCTCCCAACCTGGATTGCAGAACAGCACTATGAAGACCAGCACCTCCGCAAACAATGACTTGAAGGACCTTTTCGGCTAGAACTTTGATGTGCGTTATTTgcctttatattaaaaaaaaaaaaaaaaactgggggagggggactgaaatgtgtttttagttttttggacTTCAGCTCAAATTTCTTCAGATTGTTTTGTGTGGTGGTGGGTGTTAAATTACCCTCAGATTTTAGGCTTTAGAAGGGAAGCAGCGAACACTAGAAGAGCGGATATCCCACTTGTGCATTTGTGGCGGCAGCTTCTGAAAAGTACAGAACTCAGAAGCTGAAATGGGGGAGGAAATCAAATTGCGACAAAGCActttttatacagtatattatgaTTTACCATGAACCACACAAAGCATATGTCCAAAACTAGTTTCTGAACTAGGAGTTcatgattttgattattaaCATGCATCATGCTCTGAATATCATTCAGAcaatcatttaacatttttaattgtatgacAAAATACTGCTACACATGGCTGAATGGAAATATGCCAGTGTCCATAACCCATCGTTTTGTGTTCATGAGAACATAGTCTTagttttctttaactttttttttttgggctgCTCAAAATACCACAGGGCCTTACTCGCTGAATGTGACAggtgtgattttatttcctttgattTGTTAAAAAGCAGTCAAACTAAATGGAAGCAGGACAGAATGAATTTAGTTATCAGTAATCTGCCTCTTTATTTAGTTGTTGTGTGTGATCTTCAGGATTTGGGACCACATGGCATTGCTGAAAAATGCCTTTCGCTGTATACAAGATCTCCTTCTCCGACCATTGTATTtgcctttgaaaatgaaattcgATCTTGCTGCACATTTAGTTTAGGTAGCGGAGAGAGGATGCTAGGTTGAAAATGAAAGTAGCGATTTATTGTACATAACTGGTCAATTACTTTATTAGGTGATTTGAACATTGtatatttactgtacattgaAAGATACTTTTATAGATCTAGACGGTTCCATGAAAGGAGCATTATTCAAGACACTGAAGTGTTTCTGGCAAtagacaacttttttttttttttccagtacacTGTAAGTATTTAGGTTTCTTGTGTTTATCAAAAATTAAgcctttattgtattgtttctctgtgcacgataatttataatttaagtcTCCTAGTGCAAATGATTTATCTGGCCAAGACACTTAAACTGTTTCATCAGATCTGTGAATCGTCAGGAATTCTGTGCTTTACCACATGCAGAAACAACCTGAAAATCTGAAAGGTATTTACAGTTGTTTGACATATCAGGTAAAttaactgtttttctgtttttgtcttttttttaatctataaacaattgttttcttttcaaatattgaaaatcAAGTTTTTATGGGCCCTGTGATGCTGTAATCATTCTGCAACAACAGTTATTCTGATGTTGGCTACGTAAGATTAAACCTTTACATCTATAATAATTTACTGCCTTTTGTTTAAGATAATCTGCTTCATTTTTCTTGTGAAGTATTAACCCAGaagattttttaatttgcaggcTTAGTTTAAGggtacaatgtttttttgggttgttttttttggatgaAGGTCAGTGTATAAGCATTGATTGCAGAACACTGTTACTCCTGTATGTGTACTACAGTAATTCAGGGAACATGGGAATTAATATAACCTGCAAACATCagggtttttttggttgttttttgtcagCGAGGTgtggtatattttatttaaatccttCAATTGTCCTGGCTTtctagcttttttgttttctatttgtacACCTAATTCTAAATGTCTGTTTATCTGCAACTGAAGACTTGGGACTGTCAGTTGTGGACCCCATATTGGTGATTGTCTTTCTGTAGAAAGGCCTGTTGCAGAACCACAGCATCCCAACAACACACTAACTCTGGTCATGTGCGTTTCTTCCCATCGCTGTAACGTCTGCTGTGATTTTTGTGTAACTATTTGTATACAAAAGGGGACCGTCTTagcatgaaaatgtaatttaagtcaCTTGACGTCTATTTGGAAACAAatgaatcaaacaaaacaaaaagacaattcTTATATAGACTTTGATTCTTTAGATAAAGATGTGTAATAAATGTACAGTGTTGCGTATTTGTGCACCTTTTTGTATTGTCTGAGTGATAGTGTTGTCTGAAAGGACAACTTCAACGCATTGTGAATTTTCAGCTCTGAATGAAAACTTCTTACATTCTCGTAATCCTCCAGCTCTGTGGtttgttaaatgcattaaaGGTCGGAGAGGTTGCCAGCA

Function

symbol description
scyl2 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

NR:

description
PREDICTED: SCY1-like protein 2 isoform X3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17541 SCYL2; SCY1-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012685 True 5235 mRNA 0.44 19 4329671 4348756

Neighbor

gene id symbol gene type direction distance location
AMCG00012686 NA coding upstream 517 4320973 ~ 4329154 (+)
AMCG00012687 actr6,arp6 coding upstream 10072 4313882 ~ 4319599 (+)
AMCG00012680 NA coding upstream 146589 4161500 ~ 4183082 (+)
AMCG00012679 trabd coding upstream 171290 4134588 ~ 4158381 (+)
AMCG00012675 LOC108428417 coding upstream 429110 3886138 ~ 3900561 (+)
AMCG00012700 pah,LOC107744915,LOC107695873 coding downstream 190268 4539024 ~ 4577184 (+)
AMCG00012706 NA coding downstream 245336 4594092 ~ 4600032 (+)
AMCG00012697 NA coding downstream 272764 4621520 ~ 4623236 (+)
AMCG00012695 NA coding downstream 301542 4650298 ~ 4653916 (+)
AMCG00012699 NA coding downstream 321803 4670559 ~ 4675212 (+)
G38886 NA non-coding upstream 353054 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 367098 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 447253 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 535897 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 557433 3770836 ~ 3772238 (+)
G38964 NA non-coding downstream 168380 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 600484 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 688791 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 1088077 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 1299018 5647774 ~ 5648107 (+)
AMCG00012681 NA other upstream 78077 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 2748283 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3490405 778908 ~ 839266 (+)
G38954 NA other downstream 21557 4370313 ~ 4373574 (+)
G39297 NA other downstream 1203661 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1459090 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 1704392 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 2127493 6476249 ~ 6517983 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_01193076_01209887 SCYL2 coding CI01000019 null 1192538 ~ 1209887 (-)