G40735


Basic Information

Item Value
gene id G40735
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12741175 ~ 12742696 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50771
GGGTTTCCAGGAACAGACCTGTCACTTATAACATTGCACCAATGTGTAATACAAGTTTGGACTCTGACTTCTCAATTTACAACGGCTCTCCAGGAACCAATTATGTTGTAAGTGTGGGGGTTGCCTGTATATTTTAGGCTGCCTCAGATTAATATCTGTTAAATTCACGATCAAACTATGTTCTTTCTAATAAGTTATATTTTGATATGGAAATGTGCAATGCAGCCCTTTATTGAAAGCATTCTGAAGATACTGTGAGCTCTTGAAAGCCATGAAGTACctagtatatttattttccagttatttaaaaaagaaaagtaacaaatatatttatgaaatcttcgataagtattttaaaatatctgattttaatctcaattttgtttaaatgtaatgttttatcaatattattattctaGTAATATCAATGATAAATGCACTTTTGcaattggtatttattttaaagtcagcCTTAATTCAACTACTCTTGGActagtaattatttattttttattgtaaaagtgCAAATGATATTTTACCTAGAGTTAGGCATCCTtcaaggagaaaacaaaagctaTCAAATTCCAgcttttatattgttattagtaATTTCCTTTGGGTAAAAATCATTCAACTGTGAACCAAATTGAAGTTTGCAAAGTTTCATTTACCCAACTATGCAAAGTGCGATAAGAAAAACGAATTCACAAAGTGTTCATGAAAAGCAAattttgtatagatttttaCAAAGCGTTTTTTGTGTACaagacagaaatataaaaacacaagttcACATTCCACTGTTTTCTAGATGCTCTTTATATTCTGAATGTTCCtgaaaaaaatctgattaaacTTAAAACTATCTGACCCGGACagttttatatatgtgtaaagCCACATATTATAATCCCCCCATCTACATATGGCATAGTCtggttaaacattttcatttgaataggGCTTTCTTTATCTATTGAGGAAAACAATGCTGTTAACCAAACTTGATGCTCAGATTTAGATTCATATATATTCTTATACACTGTTGATTGAGGTGGGGTTTTAACTTAACATTTGCATCTAAACTGTTGTCGTTTTGGTCACATTGTCTGGGTGGATTAAACAATTATTCGTGGCCAACCAACTTAGACTGgcataatcaaaacaaataccTTGTACTTTTATATGTCCGTACATAAGGTTTGAATTTCTAAACTTccttaacaaaaatatatattttaagatgtgGCTAGTCTGAAAACCTGAATAAAAAATCTCCTGgtctattacattttttttccacatgcttttattttggctCGGTACAAAATGATGAATTATGAAACAACTGGAGTCATCACTGGCGAGGTTAACGATTTTCAGACGAAACATATTTCTGTTGGAATATTCCcttctgtatatatgttttcatgtaaataatgaaaaactatattcagttttatattttaaatgtttgctgaatTAAAGTTGCTCATTTGTACATGTTGAATCACAAGGcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50771 True 1522 lncRNA 0.31 1 12741175 12742696

Neighbor

gene id symbol gene type direction distance location
AMCG00012899 prkcq,LOC107555829,LOC107748461 coding downstream 71920 12651704 ~ 12669255 (-)
AMCG00012898 NA coding downstream 123792 12530394 ~ 12617383 (-)
AMCG00012891 NA coding downstream 232339 12502156 ~ 12508836 (-)
AMCG00012890 gdi2,LOC107585127,LOC107754057,LOC107694307,LOC107560733,LOC107757239 coding downstream 247909 12489418 ~ 12493266 (-)
AMCG00012889 NA coding downstream 301249 12433494 ~ 12439926 (-)
AMCG00012901 sfmbt2 coding upstream 212 12742908 ~ 12783177 (-)
AMCG00012902 LOC106576194 coding upstream 64243 12806939 ~ 12813526 (-)
AMCG00012907 NA coding upstream 126203 12868899 ~ 12883366 (-)
AMCG00012917 upf2 coding upstream 1166975 13909671 ~ 13939577 (-)
AMCG00012919 nudt5 coding upstream 1230771 13973467 ~ 13975695 (-)
G40684 NA non-coding downstream 157456 12583511 ~ 12583719 (-)
G40584 NA non-coding downstream 501718 12237229 ~ 12239457 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 2000874 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 2001797 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 2002578 10737982 ~ 10738597 (-)
G40747 NA non-coding upstream 164751 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 726609 13469305 ~ 13558179 (-)
G40868 NA non-coding upstream 1140901 13883597 ~ 13885175 (-)
G40860 NA non-coding upstream 1216108 13958804 ~ 13959820 (-)
G40892 NA non-coding upstream 1242482 13985178 ~ 13986712 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 469386 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 1878853 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 1987477 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 3588770 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 4836720 7891489 ~ 7904455 (-)
AMCG00012906 kin other upstream 153824 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 372197 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 1597720 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 2976817 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 3887535 16630231 ~ 16639087 (-)

Expression


Co-expression Network